Variant report
| Variant | rs11694646 |
|---|---|
| Chromosome Location | chr2:37738067-37738068 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10204024 | 0.82[JPT][hapmap] |
| rs11124586 | 0.82[EUR][1000 genomes] |
| rs1113496 | 0.84[EUR][1000 genomes] |
| rs11681193 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11686382 | 0.98[ASN][1000 genomes] |
| rs11693033 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11890793 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs13002004 | 0.99[ASN][1000 genomes] |
| rs13002345 | 0.99[ASN][1000 genomes] |
| rs2192940 | 0.82[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2192949 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4384766 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4503967 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4670205 | 0.84[EUR][1000 genomes] |
| rs58367831 | 0.80[ASN][1000 genomes] |
| rs62135576 | 0.97[ASN][1000 genomes] |
| rs6734373 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6746868 | 0.80[EUR][1000 genomes] |
| rs72793797 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72793802 | 0.93[ASN][1000 genomes] |
| rs7561053 | 0.85[EUR][1000 genomes] |
| rs7574012 | 0.82[EUR][1000 genomes] |
| rs7582204 | 0.81[EUR][1000 genomes] |
| rs7582414 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7584987 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs888101 | 0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9678172 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833814 | chr2:37643132-37840247 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv456374 | chr2:37669487-37868214 | Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv470453 | chr2:37669487-37868214 | Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv581473 | chr2:37669487-37868214 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:37735600-37742800 | Weak transcription | Rectal Smooth Muscle | rectum |
| 2 | chr2:37736400-37742600 | Weak transcription | Fetal Heart | heart |
