Variant report

Variant	rs11695778
Chromosome Location	chr2:174137976-174137977
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11685378	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11692098	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12618933	0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12620774	0.98[ASN][1000 genomes]
rs13023958	0.96[ASN][1000 genomes]
rs13031154	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3769148	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs66691946	0.88[ASN][1000 genomes]
rs752077	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:174126000-174138000	Weak transcription	Psoas Muscle	Psoas
2	chr2:174126400-174138800	Weak transcription	Right Ventricle	heart
3	chr2:174131200-174139200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:174133600-174138800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr2:174136200-174138200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:174136400-174138200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:174136800-174138400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr2:174137200-174138200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:174137600-174138000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:174137600-174138000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:174137600-174138000	Enhancers	Brain Hippocampus Middle	brain
12	chr2:174137600-174138200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr2:174137800-174138000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr2:174137800-174138000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr2:174137800-174138000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:174137800-174138200	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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