Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24111886..24113648-chr20:24113789..24115599,2	MCF-7	breast:
2	chr20:24112072..24114906-chr20:24115605..24118020,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1006194	0.82[EUR][1000 genomes]
rs1123671	0.81[EUR][1000 genomes]
rs11699743	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs12480224	0.83[EUR][1000 genomes]
rs1555286	0.90[ASN][1000 genomes]
rs2224232	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35663453	0.81[EUR][1000 genomes]
rs35815769	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6114487	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6114488	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6114489	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6132700	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6138203	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6138209	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6138214	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61657263	0.83[EUR][1000 genomes]
rs7262390	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs761863	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs761864	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs910776	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24110800-24113400	Enhancers	Fetal Kidney	kidney
2	chr20:24111000-24117200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr20:24111400-24117200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr20:24111400-24120400	Enhancers	Placenta	Placenta
5	chr20:24111600-24115800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:24111600-24119600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr20:24111800-24113000	Enhancers	HUVEC	blood vessel
8	chr20:24111800-24115600	Enhancers	HMEC	breast
9	chr20:24111800-24116400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr20:24112000-24113000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr20:24112000-24113000	Enhancers	Esophagus	oesophagus
12	chr20:24112000-24115000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr20:24112200-24113600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr20:24112200-24114800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr20:24112400-24113000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr20:24112600-24112800	Flanking Active TSS	NHEK	skin
17	chr20:24112600-24113000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr20:24112600-24113000	Enhancers	Pancreas	Pancrea
19	chr20:24112600-24113200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr20:24112600-24113400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr20:24112600-24113400	Enhancers	Fetal Heart	heart

Quick Search: