Variant report

Variant	rs11697353
Chromosome Location	chr20:24092770-24092771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1005527	0.93[ASN][1000 genomes]
rs1012783	0.89[ASN][1000 genomes]
rs1123671	0.87[ASN][1000 genomes]
rs11699743	0.91[ASN][1000 genomes]
rs12480224	0.91[ASN][1000 genomes]
rs17249809	0.92[ASN][1000 genomes]
rs1884519	0.92[ASN][1000 genomes]
rs2070275	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35663453	0.90[ASN][1000 genomes]
rs55921601	0.87[ASN][1000 genomes]
rs6132695	0.82[ASN][1000 genomes]
rs6132696	0.87[ASN][1000 genomes]
rs6138201	0.85[ASN][1000 genomes]
rs6138207	0.92[ASN][1000 genomes]
rs6138210	0.92[ASN][1000 genomes]
rs61657263	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24083400-24096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr20:24090000-24093600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr20:24092600-24093000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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