Variant report

Variant	rs116977182
Chromosome Location	chr11:55451701-55451702
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR4C11-1	chr11:55451617-55451701	ENSG00000254804

Extended variants
information (count: 322 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:322 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524091	chr11:54875038-55522549	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
3	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv916012	chr11:55084067-55622531	ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
5	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
7	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
8	esv2758271	chr11:55222420-55621884	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	esv2759828	chr11:55222420-55638112	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	nsv916314	chr11:55289861-55495986	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv554801	chr11:55314151-55624360	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv428256	chr11:55317076-55621884	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv1039064	chr11:55322211-55453564	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
14	esv2757445	chr11:55339702-55638112	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
15	nsv554805	chr11:55340379-55452923	Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv517440	chr11:55340379-55604412	ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
17	nsv1035185	chr11:55351524-55453564	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
18	nsv1039881	chr11:55353111-55453564	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv972950	chr11:55357920-55479824	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv71	chr11:55359025-55470359	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
21	nsv323	chr11:55359025-55470359	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
22	nsv1047160	chr11:55359448-55453564	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
23	esv2760216	chr11:55359460-55609683	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
24	esv2756702	chr11:55359656-55453486	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
25	nsv437717	chr11:55359656-55606693	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
26	esv2756696	chr11:55360213-55452834	Active TSS Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
27	esv2756720	chr11:55360213-55452834	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
28	nsv554812	chr11:55360213-55452923	Active TSS Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
29	nsv467899	chr11:55360213-55460095	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
30	nsv554813	chr11:55360213-55460095	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
31	nsv467900	chr11:55360213-55470003	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
32	nsv554814	chr11:55360213-55470003	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
33	nsv1054079	chr11:55361349-55452997	Weak transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
34	nsv1042485	chr11:55361349-55453564	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
35	nsv1037738	chr11:55361349-55463142	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
36	esv2760311	chr11:55361361-55504356	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
37	nsv554816	chr11:55361808-55452923	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
38	nsv1039236	chr11:55363328-55452997	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
39	nsv1045061	chr11:55363328-55453564	Active TSS ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
40	nsv1038036	chr11:55363328-55463142	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
41	nsv498757	chr11:55364519-55457751	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
42	nsv498758	chr11:55364522-55457751	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
43	esv13959	chr11:55364677-55453061	ZNF genes & repeats Active TSS Weak transcription Enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
44	nsv825893	chr11:55366898-55453250	ZNF genes & repeats Active TSS Enhancers Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
45	nsv825894	chr11:55366898-55460793	ZNF genes & repeats Weak transcription Active TSS Enhancers	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
46	nsv8827	chr11:55367166-55468588	Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
47	esv33874	chr11:55367167-55452993	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
48	esv2829952	chr11:55367889-55452923	ZNF genes & repeats Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
49	esv2830216	chr11:55367889-55452923	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
50	esv3693391	chr11:55367889-55452923	Weak transcription ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:55451200-55453000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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