Variant report

Variant	rs117124214
Chromosome Location	chr9:17810865-17810866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:33352554..33353197-chr9:17810608..17811353,2	MCF-7	breast:
2	chr9:17810623..17811776-chr9:18207859..18208526,4	MCF-7	breast:
3	chr9:17810712..17811652-chr9:18207926..18208828,3	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613706	chr9:17718918-18090934	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv613707	chr9:17720175-18070475	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv613708	chr9:17720175-18072085	Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1034673	chr9:17739006-17916606	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1023089	chr9:17748811-17919574	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv824867	chr9:17810486-17828870	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv8422	chr9:17810758-17829560	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17796000-17812000	Weak transcription	Aorta	Aorta
2	chr9:17808400-17812000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr9:17810600-17811800	Enhancers	Hela-S3	cervix
4	chr9:17810600-17812600	Enhancers	Fetal Brain Male	brain
5	chr9:17810800-17811000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:17810800-17811000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr9:17810800-17811000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
8	chr9:17810800-17811000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:17810800-17811000	Enhancers	Brain Angular Gyrus	brain
10	chr9:17810800-17811000	Enhancers	Brain Anterior Caudate	brain
11	chr9:17810800-17811000	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
12	chr9:17810800-17811000	Bivalent Enhancer	Fetal Lung	lung
13	chr9:17810800-17811000	Bivalent Enhancer	HUVEC	blood vessel
14	chr9:17810800-17811000	Bivalent Enhancer	Osteobl	bone
15	chr9:17810800-17811200	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr9:17810800-17811200	Active TSS	HUES48 Cell Line	embryonic stem cell
17	chr9:17810800-17811200	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr9:17810800-17811200	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr9:17810800-17811200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr9:17810800-17811200	Enhancers	Fetal Brain Female	brain
21	chr9:17810800-17811200	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr9:17810800-17812400	Enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links