The 2.0 version of rSNPBase

Variant report

Variant rs11712991
Chromosome Location chr3:23608020-23608021
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:22 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:23583400-23615200 Weak transcription Primary B cells from cord blood blood
2 chr3:23585600-23609400 Weak transcription Fetal Muscle Leg muscle
3 chr3:23590000-23608200 Weak transcription Aorta Aorta
4 chr3:23591400-23611600 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr3:23591600-23608600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr3:23597400-23613600 Weak transcription Liver Liver
7 chr3:23599600-23609400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr3:23606000-23643000 Weak transcription Primary T cells from cord blood blood
9 chr3:23606200-23609000 Weak transcription Psoas Muscle Psoas
10 chr3:23606600-23609200 Weak transcription Brain Inferior Temporal Lobe brain
11 chr3:23606800-23608400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr3:23606800-23609000 Weak transcription HSMM muscle
13 chr3:23606800-23609200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr3:23607000-23609200 Weak transcription Muscle Satellite Cultured Cells --
15 chr3:23607000-23609200 Weak transcription NHLF lung
16 chr3:23607000-23640400 Weak transcription Brain Substantia Nigra brain
17 chr3:23607600-23608200 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr3:23607600-23608600 ZNF genes & repeats GM12878-XiMat blood
19 chr3:23607600-23609800 Enhancers Skeletal Muscle Female skeletal muscle
20 chr3:23607800-23608200 Weak transcription HSMMtube muscle
21 chr3:23607800-23608600 Genic enhancers Primary B cells from peripheral blood blood
22 chr3:23607800-23608600 Weak transcription Fetal Heart heart

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Last update: Aug 31, 2015