Variant report

Variant	rs11719804
Chromosome Location	chr3:46630186-46630187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11709309	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11713702	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11714288	0.91[EUR][1000 genomes]
rs11715694	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11716682	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11919651	0.86[EUR][1000 genomes]
rs17221752	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62248664	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62248667	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6768992	0.91[EUR][1000 genomes]
rs6792245	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46626200-46630200	Enhancers	Dnd41	blood
2	chr3:46627200-46634600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:46627200-46637000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:46628400-46631000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:46628800-46651000	Weak transcription	Right Atrium	heart
6	chr3:46629200-46630800	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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