Variant report

Variant	rs11722392
Chromosome Location	chr4:86664497-86664498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1031987	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11731040	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12644984	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12646641	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12647014	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12648692	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12650494	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13112493	0.96[ASN][1000 genomes]
rs13123125	0.86[AMR][1000 genomes]
rs1482091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1482092	0.99[ASN][1000 genomes]
rs1482095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17010599	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17010697	0.92[ASN][1000 genomes]
rs17010839	0.87[AMR][1000 genomes]
rs1811576	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2624023	0.99[ASN][1000 genomes]
rs343848	0.99[ASN][1000 genomes]
rs343852	1.00[ASN][1000 genomes]
rs41477846	0.93[ASN][1000 genomes]
rs4455406	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56989679	0.93[ASN][1000 genomes]
rs57065351	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6531862	0.95[ASN][1000 genomes]
rs6531863	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6839040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6853196	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6855390	0.97[ASN][1000 genomes]
rs72656252	0.95[ASN][1000 genomes]
rs72656285	0.96[ASN][1000 genomes]
rs7661884	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7675688	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7682971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7697134	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
6	esv2763373	chr4:86655128-86673695	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86658800-86664600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:86658800-86665600	Weak transcription	Psoas Muscle	Psoas
3	chr4:86659800-86667200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:86659800-86671600	Enhancers	Primary B cells from peripheral blood	blood
5	chr4:86660400-86665200	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:86660400-86666000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:86660600-86664800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:86661600-86667200	Enhancers	A549	lung
9	chr4:86661800-86664600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:86661800-86665400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:86661800-86665600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr4:86661800-86666400	Enhancers	HSMM	muscle
13	chr4:86662000-86666200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:86662200-86664600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr4:86662200-86669200	Weak transcription	NH-A	brain
16	chr4:86662600-86666000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:86662800-86664800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:86663000-86664800	Weak transcription	Primary B cells from cord blood	blood
19	chr4:86663200-86667000	Weak transcription	Small Intestine	intestine
20	chr4:86663400-86669200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:86663400-86673200	Weak transcription	Left Ventricle	heart
22	chr4:86663400-86699800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr4:86663600-86664600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:86663600-86664600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr4:86663600-86664800	Enhancers	K562	blood
26	chr4:86663600-86665000	Weak transcription	HSMMtube	muscle
27	chr4:86663600-86665200	Enhancers	Brain Hippocampus Middle	brain
28	chr4:86663600-86665800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr4:86663600-86666600	Weak transcription	Right Atrium	heart
30	chr4:86663600-86667000	Weak transcription	Pancreas	Pancrea
31	chr4:86663800-86669200	Weak transcription	Fetal Heart	heart
32	chr4:86664000-86665400	Enhancers	NHLF	lung
33	chr4:86664000-86675600	Weak transcription	Brain Anterior Caudate	brain
34	chr4:86664200-86664600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:86664200-86664600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr4:86664200-86664600	Active TSS	Adipose Nuclei	Adipose
37	chr4:86664200-86665000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr4:86664200-86665000	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr4:86664200-86665000	Enhancers	HMEC	breast
40	chr4:86664200-86665000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr4:86664200-86665000	Flanking Active TSS	NHEK	skin
42	chr4:86664200-86665000	Enhancers	Osteobl	bone
43	chr4:86664400-86664800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:86664400-86664800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr4:86664400-86664800	Weak transcription	Brain Substantia Nigra	brain
46	chr4:86664400-86664800	Active TSS	NHDF-Ad	bronchial
47	chr4:86664400-86665000	Active TSS	GM12878-XiMat	blood
48	chr4:86664400-86673000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links