Variant report
| Variant | rs11722669 |
|---|---|
| Chromosome Location | chr4:121518325-121518326 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10002802 | 0.93[ASN][1000 genomes] |
| rs10032574 | 0.98[ASN][1000 genomes] |
| rs11098575 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11098576 | 0.97[ASN][1000 genomes] |
| rs11098577 | 0.97[ASN][1000 genomes] |
| rs11732932 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs11937849 | 0.88[ASN][1000 genomes] |
| rs12651230 | 0.98[ASN][1000 genomes] |
| rs1390552 | 0.98[ASN][1000 genomes] |
| rs1496254 | 0.98[ASN][1000 genomes] |
| rs1496257 | 0.98[ASN][1000 genomes] |
| rs1566022 | 0.98[ASN][1000 genomes] |
| rs17051029 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17341782 | 0.95[ASN][1000 genomes] |
| rs2220961 | 0.98[ASN][1000 genomes] |
| rs41518844 | 0.97[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4485827 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56350721 | 0.98[ASN][1000 genomes] |
| rs62322999 | 0.99[ASN][1000 genomes] |
| rs62323001 | 0.84[ASN][1000 genomes] |
| rs6534200 | 0.98[ASN][1000 genomes] |
| rs6534201 | 0.98[ASN][1000 genomes] |
| rs6813022 | 0.97[ASN][1000 genomes] |
| rs6835273 | 0.98[ASN][1000 genomes] |
| rs7688874 | 0.99[ASN][1000 genomes] |
| rs9996871 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007641 | chr4:120884220-121555889 | Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv537234 | chr4:120884220-121555889 | Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 3 | nsv879852 | chr4:121108734-121768496 | Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv998094 | chr4:121504565-122374203 | Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:121511200-121527400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
