Variant report

Variant	rs11723032
Chromosome Location	chr4:143628180-143628181
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10009093	0.82[EUR][1000 genomes]
rs10012389	1.00[ASN][1000 genomes]
rs10012488	1.00[ASN][1000 genomes]
rs10015404	1.00[CHB][hapmap]
rs11726084	1.00[ASN][1000 genomes]
rs11730175	1.00[ASN][1000 genomes]
rs11732693	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs11732995	0.82[EUR][1000 genomes]
rs11733464	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28538792	1.00[ASN][1000 genomes]
rs28610391	1.00[ASN][1000 genomes]
rs28848935	1.00[ASN][1000 genomes]
rs59320449	1.00[ASN][1000 genomes]
rs6856817	1.00[CHB][hapmap]
rs72726445	1.00[ASN][1000 genomes]
rs7655597	1.00[CHB][hapmap]
rs7657917	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7657937	1.00[ASN][1000 genomes]
rs7691439	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143616000-143628800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr4:143616800-143629600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr4:143620800-143642000	Weak transcription	Fetal Heart	heart
4	chr4:143622200-143629200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:143622600-143628600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr4:143624400-143629400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
7	chr4:143625200-143629600	Weak transcription	Aorta	Aorta
8	chr4:143625200-143641600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:143625400-143629800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:143626000-143628200	Enhancers	Primary hematopoietic stem cells	blood
11	chr4:143626200-143628400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:143627200-143628200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr4:143627200-143628200	Genic enhancers	Dnd41	blood
14	chr4:143627200-143628400	Weak transcription	Fetal Thymus	thymus
15	chr4:143627200-143628400	Weak transcription	Thymus	Thymus
16	chr4:143627200-143630600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
17	chr4:143627400-143628200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
18	chr4:143627400-143629600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:143627800-143628400	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr4:143628000-143628200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr4:143628000-143628200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:143628000-143628200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:143628000-143628400	Weak transcription	Primary T cells from cord blood	blood
24	chr4:143628000-143628400	Enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links