Variant report

Variant	rs11723982
Chromosome Location	chr4:143726017-143726018
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:143724161..143726942-chr4:143730485..143732877,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10024696	0.82[ASN][1000 genomes]
rs10519666	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10857399	0.91[ASN][1000 genomes]
rs11724017	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11726381	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11933763	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12509304	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12640389	0.90[ASN][1000 genomes]
rs13117185	0.91[ASN][1000 genomes]
rs13435565	0.83[ASN][1000 genomes]
rs1373030	0.86[EUR][1000 genomes]
rs1373031	0.82[ASN][1000 genomes]
rs1373034	0.82[EUR][1000 genomes]
rs1443183	0.91[ASN][1000 genomes]
rs1465962	0.91[ASN][1000 genomes]
rs167960	0.86[EUR][1000 genomes]
rs17016768	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17016777	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17016779	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17016789	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17732408	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17732791	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1822360	0.91[ASN][1000 genomes]
rs1822361	0.89[ASN][1000 genomes]
rs1822362	0.86[EUR][1000 genomes]
rs1838082	0.82[ASN][1000 genomes]
rs1867214	0.91[ASN][1000 genomes]
rs1965828	0.82[ASN][1000 genomes]
rs1992417	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1992418	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2589994	0.91[ASN][1000 genomes]
rs28420913	0.84[ASN][1000 genomes]
rs331939	0.91[ASN][1000 genomes]
rs331940	0.91[ASN][1000 genomes]
rs331942	0.91[ASN][1000 genomes]
rs331944	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs331945	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs331946	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs331947	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs331952	0.86[EUR][1000 genomes]
rs331953	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs331954	0.86[EUR][1000 genomes]
rs331956	0.86[EUR][1000 genomes]
rs331958	0.86[EUR][1000 genomes]
rs331959	0.85[EUR][1000 genomes]
rs331960	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs331961	0.86[EUR][1000 genomes]
rs331962	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs331964	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs331965	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34442253	0.81[ASN][1000 genomes]
rs34831472	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4690700	0.86[EUR][1000 genomes]
rs4690725	0.86[EUR][1000 genomes]
rs4690726	0.82[ASN][1000 genomes]
rs4690727	0.83[EUR][1000 genomes]
rs56011189	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56332157	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6537124	0.80[ASN][1000 genomes]
rs6816424	0.81[ASN][1000 genomes]
rs6831562	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6831927	0.82[ASN][1000 genomes]
rs6844306	0.83[ASN][1000 genomes]
rs6845583	0.84[ASN][1000 genomes]
rs6852570	0.80[ASN][1000 genomes]
rs72728641	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72728649	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72728651	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72728654	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72728667	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72728681	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72728686	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7666140	0.84[EUR][1000 genomes]
rs7667183	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7668552	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7668786	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7679151	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7688275	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7695461	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv595606	chr4:143631691-143729595	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143698800-143738600	Weak transcription	Aorta	Aorta
2	chr4:143709200-143732200	Weak transcription	Left Ventricle	heart
3	chr4:143718600-143736600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr4:143720200-143733200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:143724000-143732200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:143724000-143732400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:143724000-143737000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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