Variant report

Variant	rs11724681
Chromosome Location	chr4:86912951-86912952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12498346	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[ASN][1000 genomes]
rs168308	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs173201	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs182961	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2164535	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2164536	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2164537	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2575680	1.00[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2589504	1.00[CEU][hapmap];0.97[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2589509	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2665877	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs346467	1.00[CEU][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs346471	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs346475	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs346478	1.00[CEU][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs346480	1.00[CEU][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs346484	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs346485	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs346488	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs346492	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs346498	0.83[CEU][hapmap];0.81[MEX][hapmap]
rs346502	0.91[CEU][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs346503	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs346504	0.86[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs346505	0.91[CEU][hapmap];0.89[EUR][1000 genomes]
rs346506	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs346507	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35158998	0.86[AMR][1000 genomes]
rs6851229	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs958860	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs958861	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879520	chr4:86829529-86918232	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1005257	chr4:86899596-86925469	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86854200-86915800	Weak transcription	Left Ventricle	heart
2	chr4:86875200-86915800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:86880600-86915800	Weak transcription	Gastric	stomach
4	chr4:86885000-86915600	Weak transcription	Fetal Lung	lung
5	chr4:86887600-86915600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:86888800-86919200	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:86889400-86915800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:86889400-86935000	Weak transcription	Psoas Muscle	Psoas
9	chr4:86890400-86916000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:86891400-86915800	Weak transcription	HSMMtube	muscle
11	chr4:86892000-86915600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:86892000-86915600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:86892000-86915800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:86892000-86916000	Weak transcription	Spleen	Spleen
15	chr4:86894400-86915800	Weak transcription	Ovary	ovary
16	chr4:86897600-86915600	Weak transcription	Placenta	Placenta
17	chr4:86897600-86916000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:86897600-86916400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr4:86899200-86927000	Weak transcription	Lung	lung
20	chr4:86899800-86915800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr4:86899800-86915800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr4:86899800-86917800	Weak transcription	Small Intestine	intestine
23	chr4:86900000-86915600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr4:86900000-86915800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr4:86900200-86915800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:86901000-86915800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr4:86901600-86915800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:86902200-86915800	Weak transcription	Pancreas	Pancrea
29	chr4:86902800-86915800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr4:86902800-86915800	Weak transcription	Liver	Liver
31	chr4:86903000-86914600	Weak transcription	NHDF-Ad	bronchial
32	chr4:86904200-86915800	Weak transcription	Aorta	Aorta
33	chr4:86904200-86915800	Weak transcription	Fetal Stomach	stomach
34	chr4:86905000-86915800	Weak transcription	Fetal Kidney	kidney
35	chr4:86905000-86915800	Weak transcription	Right Ventricle	heart
36	chr4:86906000-86913200	Weak transcription	Fetal Muscle Leg	muscle
37	chr4:86906400-86916000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr4:86906800-86913000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr4:86906800-86913200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr4:86906800-86913400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:86907800-86916000	Weak transcription	Osteobl	bone
42	chr4:86908600-86913000	Weak transcription	Primary B cells from peripheral blood	blood
43	chr4:86909200-86913200	Weak transcription	HUVEC	blood vessel
44	chr4:86911000-86919400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr4:86911800-86916000	Weak transcription	NHLF	lung
46	chr4:86912200-86913800	Strong transcription	Primary B cells from cord blood	blood
47	chr4:86912200-86913800	Strong transcription	HSMM	muscle
48	chr4:86912400-86913800	Strong transcription	Adipose Nuclei	Adipose
49	chr4:86912400-86914000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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