Variant report

Variant	rs11727072
Chromosome Location	chr4:48200656-48200657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:48199323..48202790-chr4:48204123..48207429,4	K562	blood:
2	chr4:48200101..48201896-chr4:48269773..48271789,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13108221	0.86[AMR][1000 genomes]
rs1973578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2017242	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56789983	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58948620	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59192457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60145199	0.93[ASN][1000 genomes]
rs60658182	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67807921	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837345	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73244502	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73246006	0.93[AMR][1000 genomes]
rs73814695	0.93[ASN][1000 genomes]
rs73814697	0.93[ASN][1000 genomes]
rs7697423	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482316	chr4:48151953-48338746	Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv2763359	chr4:48189710-48290233	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48190400-48222000	Weak transcription	Fetal Intestine Small	intestine
2	chr4:48190600-48207200	Weak transcription	Spleen	Spleen
3	chr4:48195000-48208200	Enhancers	Primary B cells from peripheral blood	blood
4	chr4:48196200-48207200	Weak transcription	Lung	lung
5	chr4:48198000-48203000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:48198200-48203600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:48198200-48207200	Weak transcription	Pancreas	Pancrea
8	chr4:48198800-48201400	Enhancers	Primary hematopoietic stem cells	blood
9	chr4:48199000-48205400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:48199400-48203200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr4:48199400-48203400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr4:48199400-48205200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:48200200-48202200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:48200200-48204800	Weak transcription	Primary B cells from cord blood	blood
15	chr4:48200200-48212400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:48200400-48200800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:48200400-48205400	Weak transcription	Left Ventricle	heart
18	chr4:48200400-48205800	Weak transcription	Right Ventricle	heart
19	chr4:48200600-48201600	Enhancers	K562	blood
20	chr4:48200600-48203000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr4:48200600-48204800	Enhancers	GM12878-XiMat	blood

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