Variant report

Variant	rs11728631
Chromosome Location	chr4:7594057-7594058
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:7593992..7597471-chr4:7599125..7601192,3	MCF-7	breast:
2	chr4:7572559..7575024-chr4:7593653..7596261,2	K562	blood:
3	chr4:7587235..7591067-chr4:7593146..7595528,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10022225	0.91[JPT][hapmap];0.85[EUR][1000 genomes]
rs1015524	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10937837	0.82[EUR][1000 genomes]
rs10937838	0.85[EUR][1000 genomes]
rs10937840	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11721619	0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11731047	0.94[CEU][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11735301	0.82[CEU][hapmap];0.85[JPT][hapmap];0.91[EUR][1000 genomes]
rs11942830	0.86[JPT][hapmap];0.85[EUR][1000 genomes]
rs11943985	0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs13122192	0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13149527	0.81[EUR][1000 genomes]
rs17465228	0.85[CHB][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34697516	0.82[EUR][1000 genomes]
rs35171394	0.81[EUR][1000 genomes]
rs4594727	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4689781	0.85[CEU][hapmap]
rs4689785	0.84[EUR][1000 genomes]
rs4689786	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4689787	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4689789	0.90[CEU][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4689790	0.95[CEU][hapmap]
rs4689791	0.89[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6853188	0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs734526	0.90[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv593569	chr4:7291363-7626136	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1011547	chr4:7318232-7637410	Active TSS ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537017	chr4:7318232-7637410	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv461212	chr4:7572718-7620195	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv593617	chr4:7572718-7620195	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv461213	chr4:7584560-7637297	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv593618	chr4:7584560-7637297	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv508272	chr4:7591967-7722112	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7591600-7594200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
2	chr4:7591600-7594800	Enhancers	Fetal Brain Female	brain
3	chr4:7592000-7595800	Enhancers	Brain Cingulate Gyrus	brain
4	chr4:7592200-7594200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:7592400-7595200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:7592400-7595600	Enhancers	Brain Substantia Nigra	brain
7	chr4:7592400-7596000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:7592600-7594400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:7592600-7594600	Enhancers	Brain Hippocampus Middle	brain
10	chr4:7592800-7594400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr4:7592800-7596600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:7593000-7594200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:7593000-7594400	Enhancers	Brain Angular Gyrus	brain
14	chr4:7594000-7594200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:7594000-7594400	Flanking Active TSS	Brain Germinal Matrix	brain
16	chr4:7594000-7595200	Enhancers	Brain Anterior Caudate	brain

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