Variant report

Variant	rs11728822
Chromosome Location	chr4:143462713-143462714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10519649	0.94[JPT][hapmap]
rs10857395	0.87[JPT][hapmap]
rs12504418	0.94[JPT][hapmap]
rs13145040	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1425518	0.82[CHB][hapmap];0.83[CHD][hapmap];0.81[JPT][hapmap]
rs1425520	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16998560	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs17660975	0.81[AFR][1000 genomes]
rs17717651	0.87[JPT][hapmap]
rs2059510	0.93[JPT][hapmap]
rs2217016	0.82[CHB][hapmap]
rs4975306	0.94[JPT][hapmap]
rs62328348	0.81[AFR][1000 genomes]
rs890191	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498005	chr4:142515689-143502988	Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143438800-143462800	Weak transcription	Aorta	Aorta
2	chr4:143444800-143468400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:143453000-143464000	Weak transcription	Fetal Intestine Small	intestine
4	chr4:143456800-143468400	Weak transcription	HMEC	breast
5	chr4:143457000-143466600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:143458000-143463200	Enhancers	Primary hematopoietic stem cells	blood
7	chr4:143458800-143463400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr4:143460400-143463200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr4:143461000-143463400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr4:143461200-143463200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr4:143461400-143471000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:143461800-143462800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:143461800-143466200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:143462200-143463000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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