Variant report

Variant	rs1172966
Chromosome Location	chr13:67619325-67619326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67618768..67621421-chr13:67666837..67668518,2	K562	blood:
2	chr13:67611732..67614272-chr13:67618867..67621097,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1041025	1.00[AMR][1000 genomes]
rs1172965	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1185467	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1323921	1.00[AMR][1000 genomes]
rs1323925	1.00[AMR][1000 genomes]
rs1323928	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs155017	1.00[AMR][1000 genomes]
rs155018	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs166335	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs166349	1.00[AMR][1000 genomes]
rs169001	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs187756	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs192322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2038721	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2149320	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2181755	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2181881	1.00[AMR][1000 genomes]
rs2181882	1.00[AMR][1000 genomes]
rs2325021	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs260127	1.00[AMR][1000 genomes]
rs260128	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs260129	1.00[AMR][1000 genomes]
rs260132	1.00[AMR][1000 genomes]
rs260133	1.00[AMR][1000 genomes]
rs260134	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs260135	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs260137	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs260138	0.93[AFR][1000 genomes]
rs260151	1.00[AMR][1000 genomes]
rs260158	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs260159	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs260163	1.00[AMR][1000 genomes]
rs260171	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2875515	1.00[AMR][1000 genomes]
rs4883791	1.00[AMR][1000 genomes]
rs4884709	1.00[AMR][1000 genomes]
rs4884710	1.00[AMR][1000 genomes]
rs4884711	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6562479	1.00[AMR][1000 genomes]
rs6562480	1.00[AMR][1000 genomes]
rs7318303	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7984929	1.00[AMR][1000 genomes]
rs7986118	1.00[AMR][1000 genomes]
rs7986616	1.00[AMR][1000 genomes]
rs7986875	1.00[AMR][1000 genomes]
rs7997315	1.00[AMR][1000 genomes]
rs9540962	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9540963	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs958743	1.00[AMR][1000 genomes]
rs9599166	1.00[AMR][1000 genomes]
rs974880	1.00[AMR][1000 genomes]
rs974881	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv832640	chr13:67460304-67635966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv428604	chr13:67480426-67645030	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045093	chr13:67517932-67693875	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv541821	chr13:67517932-67693875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67613400-67619800	Weak transcription	Fetal Lung	lung
2	chr13:67616600-67625400	Enhancers	Brain Cingulate Gyrus	brain
3	chr13:67617400-67620000	Enhancers	Brain Substantia Nigra	brain
4	chr13:67617600-67621800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr13:67618200-67619600	Enhancers	Brain Hippocampus Middle	brain
6	chr13:67618400-67623800	Enhancers	Brain Anterior Caudate	brain
7	chr13:67618600-67621400	Enhancers	Hela-S3	cervix
8	chr13:67618600-67622200	Weak transcription	Osteobl	bone
9	chr13:67618800-67620000	Enhancers	Brain Angular Gyrus	brain
10	chr13:67618800-67622000	Weak transcription	NH-A	brain
11	chr13:67619200-67619400	Enhancers	HSMMtube	muscle
12	chr13:67619200-67619600	Enhancers	Brain Inferior Temporal Lobe	brain

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