Variant report

Variant	rs11730175
Chromosome Location	chr4:143576755-143576756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10012389	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10012488	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11723032	1.00[ASN][1000 genomes]
rs11726084	1.00[ASN][1000 genomes]
rs11733242	0.83[EUR][1000 genomes]
rs11733464	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28538792	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28610391	1.00[ASN][1000 genomes]
rs28848935	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59320449	1.00[ASN][1000 genomes]
rs72726445	1.00[ASN][1000 genomes]
rs7657937	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143574400-143583800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:143575400-143579000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
3	chr4:143575400-143583800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:143575600-143582400	ZNF genes & repeats	Dnd41	blood
5	chr4:143575800-143578400	ZNF genes & repeats	Liver	Liver
6	chr4:143575800-143578400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr4:143575800-143579800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:143576000-143577600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:143576000-143578200	ZNF genes & repeats	Adipose Nuclei	Adipose
10	chr4:143576000-143578200	ZNF genes & repeats	Fetal Lung	lung
11	chr4:143576000-143578800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chr4:143576200-143577200	Weak transcription	Fetal Heart	heart
13	chr4:143576200-143579800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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