Variant report

Variant	rs11733103
Chromosome Location	chr4:106890370-106890371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10001634	0.81[ASW][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10002265	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021819	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11722309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11733075	1.00[EUR][1000 genomes]
rs11735326	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413994	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28457630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28488638	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28546590	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28602429	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28666673	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28735827	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72956798	0.82[AFR][1000 genomes]
rs72956799	0.82[AFR][1000 genomes]
rs72958805	0.86[AFR][1000 genomes]
rs72958806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958808	0.84[AFR][1000 genomes]
rs72958813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72958815	0.86[AFR][1000 genomes]
rs9990521	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106868400-106892000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:106881000-106890400	Weak transcription	Small Intestine	intestine
3	chr4:106885400-106909800	Weak transcription	Aorta	Aorta
4	chr4:106885600-106891600	Weak transcription	Fetal Intestine Small	intestine
5	chr4:106885600-106894000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:106886600-106894600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:106887200-106890400	Weak transcription	Spleen	Spleen
8	chr4:106887200-106892200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:106888600-106893800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:106888600-106894000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:106888800-106890600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:106888800-106891200	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:106888800-106892000	Weak transcription	HSMMtube	muscle
14	chr4:106888800-106893600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:106888800-106894200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:106889200-106893600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr4:106889200-106893600	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr4:106889200-106893600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:106889200-106893800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr4:106889200-106894000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:106889400-106893800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr4:106889400-106894000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:106890000-106890400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:106890000-106890400	Enhancers	K562	blood
25	chr4:106890000-106890600	Genic enhancers	Pancreas	Pancrea
26	chr4:106890000-106891000	Strong transcription	Fetal Intestine Large	intestine
27	chr4:106890000-106891400	Enhancers	Psoas Muscle	Psoas
28	chr4:106890200-106890400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:106890200-106890400	Enhancers	Left Ventricle	heart
30	chr4:106890200-106890400	Enhancers	Right Ventricle	heart
31	chr4:106890200-106890600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr4:106890200-106890600	Enhancers	Right Atrium	heart
33	chr4:106890200-106890800	Strong transcription	Fetal Heart	heart
34	chr4:106890200-106891000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr4:106890200-106891600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr4:106890200-106891600	Enhancers	Skeletal Muscle Female	skeletal muscle

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