Variant report

Variant	rs117346089
Chromosome Location	chr9:16463198-16463199
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv3482019	chr9:16463159-16463703	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16457600-16463200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:16457800-16493400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:16458000-16470400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:16459600-16470800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:16459600-16482400	Weak transcription	A549	lung
6	chr9:16459600-16499800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:16459600-16500000	Weak transcription	NHLF	lung
8	chr9:16460600-16463200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:16460600-16463200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr9:16460800-16463200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr9:16460800-16485400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:16461000-16463200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr9:16461200-16463200	Enhancers	Colon Smooth Muscle	Colon
14	chr9:16461400-16463200	Enhancers	Fetal Stomach	stomach
15	chr9:16461400-16463200	Enhancers	Ovary	ovary
16	chr9:16461600-16463200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr9:16462000-16463800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:16462000-16470600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:16462000-16476400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr9:16462200-16470400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:16462200-16474000	Weak transcription	Fetal Lung	lung
22	chr9:16463000-16463200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr9:16463000-16463200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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