Variant report

Variant	rs11736679
Chromosome Location	chr4:106995182-106995183
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10009873	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10010622	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10010712	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10023586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10026011	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10033060	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11729561	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11729801	0.90[AMR][1000 genomes]
rs28408532	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28432701	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28472461	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28597815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28600674	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28648796	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28663259	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28668834	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28722963	0.90[AMR][1000 genomes]
rs28783132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28786397	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28786712	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28823294	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28843476	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28848568	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28852980	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28857517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28890246	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7356173	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7679603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9996386	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414280	chr4:106987397-107017178	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3419151	chr4:106987397-107020894	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106972400-106997000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106984000-107010200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:106984600-106998200	Weak transcription	Fetal Heart	heart
4	chr4:106985000-107011400	Weak transcription	HepG2	liver
5	chr4:106986800-107002400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:106987000-106995800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:106990000-106998000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:106992400-106998000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr4:106993000-107008800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:106993200-106997000	Weak transcription	Gastric	stomach
11	chr4:106993200-106997200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:106993200-106997800	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:106993200-107010000	Weak transcription	Left Ventricle	heart
14	chr4:106993400-106998200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:106993400-107010400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr4:106993600-106998200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr4:106993600-106998400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:106993600-107002400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr4:106993600-107010000	Weak transcription	Right Ventricle	heart
20	chr4:106993800-107010800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr4:106994400-106996200	ZNF genes & repeats	Liver	Liver
22	chr4:106994400-106997000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr4:106994400-106997000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr4:106994400-106998400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr4:106994600-106995200	ZNF genes & repeats	Fetal Lung	lung
26	chr4:106994600-106995200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
27	chr4:106994600-106995400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
28	chr4:106994600-106995400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:106994600-106995400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:106994600-106995400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
31	chr4:106994600-106995400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
32	chr4:106994600-106995400	ZNF genes & repeats	Fetal Stomach	stomach
33	chr4:106994600-106996200	ZNF genes & repeats	Fetal Intestine Large	intestine
34	chr4:106994600-106996200	ZNF genes & repeats	Fetal Intestine Small	intestine
35	chr4:106994600-106996200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
36	chr4:106994600-106997000	Weak transcription	HSMM	muscle
37	chr4:106994600-106998400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr4:106994600-107015000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr4:106994800-106995200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:106994800-106995200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:106994800-106995200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr4:106994800-106995400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr4:106994800-106995400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:106994800-106995400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr4:106994800-106995400	ZNF genes & repeats	Adipose Nuclei	Adipose
46	chr4:106994800-106995400	ZNF genes & repeats	Fetal Brain Female	brain
47	chr4:106994800-106995400	Strong transcription	Fetal Kidney	kidney
48	chr4:106994800-106996000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr4:106994800-106996000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr4:106994800-106996200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived

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