Variant report

Variant	rs11737047
Chromosome Location	chr4:48086127-48086128
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:48081284..48083247-chr4:48085734..48088525,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000074966	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1018199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1046695	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11722304	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11724102	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724347	1.00[ASN][1000 genomes]
rs13108221	1.00[ASN][1000 genomes]
rs1507924	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2352587	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2352588	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505096	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34184567	1.00[ASN][1000 genomes]
rs36082349	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55781011	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814131	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6832282	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6837702	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844476	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73151629	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs906486	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48067600-48102400	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr4:48069800-48088000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr4:48070800-48105200	Weak transcription	GM12878-XiMat	blood
4	chr4:48073800-48088000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:48073800-48088000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:48076600-48092400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:48079000-48087400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:48081600-48094200	Weak transcription	Pancreas	Pancrea
9	chr4:48082400-48088400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:48082600-48086200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr4:48082600-48088000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:48082800-48088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:48082800-48088200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:48083000-48098000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:48083000-48098200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr4:48083400-48098200	Strong transcription	Primary T cells from cord blood	blood
17	chr4:48084400-48088000	Weak transcription	Aorta	Aorta
18	chr4:48084400-48098000	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr4:48084600-48088600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr4:48084600-48101600	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr4:48085200-48087400	Weak transcription	Hela-S3	cervix
22	chr4:48085200-48088800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr4:48085200-48089000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:48085200-48102400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr4:48085400-48087400	Weak transcription	Placenta	Placenta
26	chr4:48086000-48088000	Weak transcription	Fetal Thymus	thymus

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