Variant report

Variant	rs11742202
Chromosome Location	chr5:118495671-118495672
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118494371..118496864-chr5:118503410..118506409,2	K562	blood:
2	chr5:118486635..118489506-chr5:118495369..118497251,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11742146	0.84[EUR][1000 genomes]
rs12520260	1.00[ASW][hapmap];0.89[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6895651	1.00[ASW][hapmap];0.89[CEU][hapmap];0.84[TSI][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882774	chr5:118325429-118553470	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv462426	chr5:118465249-118621672	Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv599564	chr5:118465249-118621672	ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv1016595	chr5:118468658-118621672	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv1019788	chr5:118488501-118607405	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv537882	chr5:118488501-118607405	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11742202	SNCAIP	cis	parietal	SCAN

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118412200-118522800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr5:118450400-118496800	Weak transcription	Stomach Mucosa	stomach
3	chr5:118451200-118533400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:118453800-118522800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:118470000-118503200	Weak transcription	NH-A	brain
6	chr5:118472800-118504000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr5:118472800-118505000	Weak transcription	HepG2	liver
8	chr5:118473000-118497000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:118473400-118496800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:118473800-118505000	Weak transcription	A549	lung
11	chr5:118479000-118526000	Weak transcription	Fetal Brain Male	brain
12	chr5:118483000-118541400	Weak transcription	NHEK	skin
13	chr5:118484800-118506400	Weak transcription	Fetal Heart	heart
14	chr5:118485200-118503800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr5:118485400-118500200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr5:118485400-118506600	Weak transcription	HSMMtube	muscle
17	chr5:118485400-118522800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr5:118485600-118496800	Weak transcription	Gastric	stomach
19	chr5:118485600-118496800	Weak transcription	Spleen	Spleen
20	chr5:118485600-118500200	Weak transcription	HSMM	muscle
21	chr5:118485600-118515800	Weak transcription	Hela-S3	cervix
22	chr5:118485800-118496800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:118485800-118497400	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr5:118485800-118500200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr5:118485800-118501200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr5:118485800-118503400	Weak transcription	HUVEC	blood vessel
27	chr5:118485800-118515600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr5:118485800-118534000	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr5:118485800-118572200	Weak transcription	Small Intestine	intestine
30	chr5:118486000-118500200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr5:118486000-118501600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr5:118486000-118534200	Weak transcription	Brain Angular Gyrus	brain
33	chr5:118486000-118588600	Weak transcription	Right Ventricle	heart
34	chr5:118486200-118496800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:118486200-118499600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr5:118486200-118500000	Weak transcription	NHDF-Ad	bronchial
37	chr5:118486200-118513000	Weak transcription	Brain Germinal Matrix	brain
38	chr5:118486200-118526000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr5:118486200-118534200	Weak transcription	Colon Smooth Muscle	Colon
40	chr5:118486400-118496800	Weak transcription	Lung	lung
41	chr5:118486400-118497000	Weak transcription	Pancreas	Pancrea
42	chr5:118486400-118500000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:118486400-118500000	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr5:118486400-118500200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr5:118486400-118501800	Weak transcription	NHLF	lung
46	chr5:118486400-118504400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr5:118486600-118496800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr5:118486600-118496800	Weak transcription	Fetal Stomach	stomach
49	chr5:118486600-118515800	Weak transcription	Osteobl	bone
50	chr5:118488000-118501200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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