Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10939838	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10939839	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11742541	1.00[CHD][hapmap];0.88[GIH][hapmap]
rs12186826	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12187669	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12188020	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13157125	1.00[CHD][hapmap];0.85[TSI][hapmap]
rs13186687	1.00[CHD][hapmap]
rs17385322	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2113071	0.87[EUR][1000 genomes]
rs34072532	0.86[EUR][1000 genomes]
rs34886118	0.86[EUR][1000 genomes]
rs35381370	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4270654	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4513649	1.00[CHD][hapmap];0.85[TSI][hapmap]
rs4577666	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6889641	0.83[TSI][hapmap]
rs71627994	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71627995	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71627996	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71627998	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv4847	chr5:59523591-59569307	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3376670	chr5:59565291-59567158	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59559600-59584800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59561600-59576600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:59562000-59565800	Weak transcription	Gastric	stomach
4	chr5:59562400-59565600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:59564000-59565600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr5:59564200-59565600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr5:59565400-59567400	Weak transcription	Aorta	Aorta

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