The 2.0 version of rSNPBase

Variant report

Variant rs11747277
Chromosome Location chr5:80871082-80871083
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:35 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80803600-80875200 Weak transcription Fetal Brain Female brain
2 chr5:80835200-80872800 Weak transcription Fetal Kidney kidney
3 chr5:80835200-80875200 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr5:80835600-80876000 Weak transcription Primary T helper cells PMA-I stimulated --
5 chr5:80840800-80883400 Weak transcription HSMM muscle
6 chr5:80840800-80884600 Weak transcription Ovary ovary
7 chr5:80844200-80884600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
8 chr5:80846200-80880600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr5:80849000-80885600 Weak transcription Left Ventricle heart
10 chr5:80860200-80878800 Weak transcription Esophagus oesophagus
11 chr5:80862400-80874800 Weak transcription Brain Hippocampus Middle brain
12 chr5:80862800-80878800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr5:80863800-80872000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
14 chr5:80864200-80886400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr5:80864200-80894200 Weak transcription Fetal Lung lung
16 chr5:80864600-80894200 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr5:80864800-80875200 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr5:80865000-80871600 Weak transcription Primary hematopoietic stem cells short term culture blood
19 chr5:80865000-80875200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr5:80867800-80875200 Weak transcription Brain Inferior Temporal Lobe brain
21 chr5:80868200-80871200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
22 chr5:80868600-80875200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr5:80869200-80875400 Weak transcription Primary T cells from cord blood blood
24 chr5:80869400-80871800 Strong transcription Dnd41 blood
25 chr5:80869400-80887600 Weak transcription Fetal Stomach stomach
26 chr5:80869800-80886400 Weak transcription Thymus Thymus
27 chr5:80870000-80887600 Weak transcription Aorta Aorta
28 chr5:80870200-80875200 Weak transcription GM12878-XiMat blood
29 chr5:80870600-80871600 Weak transcription Primary hematopoietic stem cells blood
30 chr5:80870600-80883000 Weak transcription Fetal Thymus thymus
31 chr5:80870600-80886600 Weak transcription Breast Myoepithelial Primary Cells Breast
32 chr5:80870800-80871400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr5:80870800-80894200 Weak transcription Primary B cells from cord blood blood
34 chr5:80871000-80871600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr5:80871000-80871600 Enhancers HUVEC blood vessel

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Last update: Aug 31, 2015