Variant report

Variant	rs11749636
Chromosome Location	chr5:178091183-178091184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10056621	0.95[ASN][1000 genomes]
rs10058176	0.95[ASN][1000 genomes]
rs10058250	0.95[ASN][1000 genomes]
rs10058375	0.94[ASN][1000 genomes]
rs10058458	0.95[ASN][1000 genomes]
rs10058523	0.95[ASN][1000 genomes]
rs10060075	0.95[ASN][1000 genomes]
rs10063438	0.95[ASN][1000 genomes]
rs11249557	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11249558	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11249560	0.95[ASN][1000 genomes]
rs11249561	0.95[ASN][1000 genomes]
rs11249562	0.95[ASN][1000 genomes]
rs11249563	0.95[ASN][1000 genomes]
rs11739297	0.95[ASN][1000 genomes]
rs11740168	0.95[ASN][1000 genomes]
rs17081588	0.95[ASN][1000 genomes]
rs55662282	0.95[ASN][1000 genomes]
rs6889262	0.95[ASN][1000 genomes]
rs7725805	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1031666	chr5:177988601-178236068	Bivalent/Poised TSS Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1023697	chr5:178070594-178126328	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537972	chr5:178070594-178126328	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv5155	chr5:178075100-178132799	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178089800-178091400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:178090600-178091800	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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