Variant report

Variant	rs11753937
Chromosome Location	chr6:133663589-133663590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133608130..133609733-chr6:133662657..133665396,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10485232	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11759873	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12523816	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1336521	0.81[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17062339	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs211589	0.82[MKK][hapmap]
rs211591	0.82[MKK][hapmap]
rs211593	0.82[MKK][hapmap]
rs212787	0.82[MKK][hapmap]
rs296416	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs296418	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs296421	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs369425	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs375189	0.83[CEU][hapmap]
rs377962	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs402020	0.83[CEU][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap]
rs439123	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs519332	0.82[MEX][hapmap]
rs572004	0.81[MEX][hapmap]
rs6569876	0.81[CHD][hapmap]
rs72991933	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72991942	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs949767	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant related diseases (count:1)

Disease	PMID	Source
Response to angiotensin II receptor blocker therapy	22566498	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11753937	TAAR2	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133654600-133667800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:133660400-133664000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:133661400-133663600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:133661400-133663800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:133661600-133663600	Enhancers	NH-A	brain
6	chr6:133662200-133679200	Weak transcription	Psoas Muscle	Psoas
7	chr6:133662400-133664600	Enhancers	Hela-S3	cervix
8	chr6:133663000-133663800	Enhancers	Gastric	stomach
9	chr6:133663200-133663600	Enhancers	Fetal Intestine Small	intestine
10	chr6:133663200-133667400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:133663400-133664400	Enhancers	A549	lung
12	chr6:133663400-133666600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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