Variant report

Variant	rs11754468
Chromosome Location	chr6:74932522-74932523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10485388	0.81[ASN][1000 genomes]
rs11751061	0.81[ASN][1000 genomes]
rs11751771	0.83[ASN][1000 genomes]
rs11752920	0.86[EUR][1000 genomes]
rs11754164	0.83[ASN][1000 genomes]
rs11758445	0.86[EUR][1000 genomes]
rs11759133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191462	0.81[ASN][1000 genomes]
rs12193999	0.83[ASN][1000 genomes]
rs12198091	0.81[ASN][1000 genomes]
rs12202674	0.83[ASN][1000 genomes]
rs16884519	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16884624	0.86[EUR][1000 genomes]
rs16884690	0.84[EUR][1000 genomes]
rs1817735	0.86[EUR][1000 genomes]
rs3898077	0.92[EUR][1000 genomes]
rs3923228	0.81[ASN][1000 genomes]
rs4537105	0.81[ASN][1000 genomes]
rs4546447	0.81[ASN][1000 genomes]
rs55768795	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55784940	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55962148	0.92[EUR][1000 genomes]
rs56004196	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56020332	0.86[EUR][1000 genomes]
rs56138029	0.81[ASN][1000 genomes]
rs56168817	0.84[EUR][1000 genomes]
rs56232317	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56362119	0.81[ASN][1000 genomes]
rs67076726	0.86[EUR][1000 genomes]
rs6926572	0.84[EUR][1000 genomes]
rs72950543	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72950546	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72952371	0.81[ASN][1000 genomes]
rs72952395	0.81[ASN][1000 genomes]
rs72952398	0.81[ASN][1000 genomes]
rs72953763	0.86[EUR][1000 genomes]
rs72954314	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957983	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72957986	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72957999	0.88[EUR][1000 genomes]
rs72959615	0.86[EUR][1000 genomes]
rs72959617	0.80[EUR][1000 genomes]
rs72959619	0.86[EUR][1000 genomes]
rs72962230	0.83[ASN][1000 genomes]
rs72964214	0.87[ASN][1000 genomes]
rs72967265	0.86[EUR][1000 genomes]
rs72967284	0.86[EUR][1000 genomes]
rs72967286	0.86[EUR][1000 genomes]
rs7755776	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7776273	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3370657	chr6:74930732-74935030	Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a
6	esv3509793	chr6:74932007-74934080	Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74932200-74932600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:74932200-74933200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:74932200-74933400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:74932200-74933600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:74932400-74932600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:74932400-74932600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:74932400-74932600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:74932400-74932800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:74932400-74933000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr6:74932400-74933000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:74932400-74933000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:74932400-74933000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:74932400-74933000	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr6:74932400-74933200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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