Variant report

Variant	rs117544757
Chromosome Location	chr3:143220320-143220321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143212932..143214521-chr3:143217945..143220851,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv511204	chr3:143215072-143222874	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv523529	chr3:143215472-143229569	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv10334	chr3:143217154-143221569	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3515177	chr3:143218412-143222610	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv3496002	chr3:143218912-143222210	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv3496001	chr3:143219288-143220530	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3496003	chr3:143219288-143220530	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3515180	chr3:143219474-143221314	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3462587	chr3:143219474-143221326	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3515175	chr3:143219479-143221235	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3515176	chr3:143219501-143221254	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3462584	chr3:143219509-143221287	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3462586	chr3:143219509-143221296	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3515178	chr3:143219529-143221268	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3462583	chr3:143219530-143221244	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv513083	chr3:143219541-143221770	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3462582	chr3:143219571-143221224	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3515179	chr3:143219580-143221230	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3462588	chr3:143219587-143221223	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3515181	chr3:143219587-143221223	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv33993	chr3:143219664-143221256	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv18470	chr3:143219782-143221190	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143174400-143220400	Weak transcription	Fetal Lung	lung
2	chr3:143176800-143220400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:143179400-143220400	Weak transcription	Brain Substantia Nigra	brain
4	chr3:143186000-143223000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr3:143191400-143231000	Weak transcription	Primary B cells from cord blood	blood
6	chr3:143201800-143226400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:143209000-143226800	Weak transcription	Adipose Nuclei	Adipose
8	chr3:143212600-143224800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr3:143212600-143247400	Weak transcription	Primary T cells from cord blood	blood
10	chr3:143215600-143226800	Weak transcription	Fetal Stomach	stomach
11	chr3:143219800-143222200	Weak transcription	Esophagus	oesophagus
12	chr3:143220200-143220800	Enhancers	Brain Angular Gyrus	brain
13	chr3:143220200-143220800	Enhancers	Brain Germinal Matrix	brain
14	chr3:143220200-143221200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:143220200-143221200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr3:143220200-143221200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:143220200-143221200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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