Variant report

Variant	rs11758839
Chromosome Location	chr6:13210319-13210320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11756770	1.00[ASN][1000 genomes]
rs11757262	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2000373	1.00[CHB][hapmap]
rs6908840	0.85[JPT][hapmap]
rs6927426	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13178800-13217400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:13182000-13211800	Weak transcription	Fetal Brain Female	brain
3	chr6:13182000-13212000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:13184000-13220800	Weak transcription	Brain Germinal Matrix	brain
6	chr6:13187400-13217400	Weak transcription	Right Atrium	heart
7	chr6:13191800-13210800	Weak transcription	Fetal Heart	heart
8	chr6:13192400-13216800	Weak transcription	Fetal Intestine Small	intestine
9	chr6:13201400-13216200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:13201600-13215600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:13202400-13213200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:13202400-13218400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:13203000-13216800	Weak transcription	Adipose Nuclei	Adipose
14	chr6:13203200-13230200	Weak transcription	Fetal Stomach	stomach
15	chr6:13203600-13217400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:13205000-13214400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:13205400-13217400	Weak transcription	HSMM	muscle
18	chr6:13206400-13211800	Weak transcription	Gastric	stomach
19	chr6:13206400-13211800	Weak transcription	Right Ventricle	heart
20	chr6:13206400-13217400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:13206400-13229800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:13206400-13230000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:13207800-13211800	Weak transcription	Aorta	Aorta
24	chr6:13207800-13217400	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:13208000-13217400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:13208200-13211800	Weak transcription	Lung	lung
27	chr6:13208200-13216600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:13208200-13217400	Weak transcription	Brain Anterior Caudate	brain
29	chr6:13208200-13217400	Weak transcription	Pancreas	Pancrea
30	chr6:13208200-13239800	Weak transcription	Brain Substantia Nigra	brain
31	chr6:13208400-13230200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:13208600-13211600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr6:13208600-13217400	Weak transcription	Left Ventricle	heart
34	chr6:13209600-13215600	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:13209600-13216600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:13209600-13217000	Weak transcription	HUVEC	blood vessel
37	chr6:13209800-13211000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:13209800-13215400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:13210200-13212000	Weak transcription	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links