Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:77571315..77572854-chr6:77575664..77578311,2	MCF-7	breast:
2	chr6:77575911..77578769-chr6:77582342..77584830,2	MCF-7	breast:
3	chr6:77576372..77578055-chr6:77585429..77587014,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-10	chr6:77575439-77584888	NONHSAT113649

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10455104	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943383	0.84[EUR][1000 genomes]
rs12203866	0.81[EUR][1000 genomes]
rs12204609	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12204639	0.86[EUR][1000 genomes]
rs12208502	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13216684	0.81[EUR][1000 genomes]
rs13219726	0.85[EUR][1000 genomes]
rs1462476	0.83[EUR][1000 genomes]
rs1563660	0.83[EUR][1000 genomes]
rs1564071	0.85[EUR][1000 genomes]
rs16888110	0.86[EUR][1000 genomes]
rs1903696	0.86[EUR][1000 genomes]
rs2315263	0.81[EUR][1000 genomes]
rs28706823	0.86[EUR][1000 genomes]
rs34383988	0.86[EUR][1000 genomes]
rs34606836	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4706636	0.81[EUR][1000 genomes]
rs4708294	0.92[EUR][1000 genomes]
rs6907072	0.83[EUR][1000 genomes]
rs7748745	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751083	0.85[EUR][1000 genomes]
rs7767053	0.81[EUR][1000 genomes]
rs9343511	0.84[EUR][1000 genomes]
rs9352401	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830701	chr6:77509152-77678602	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv432924	chr6:77566201-77617213	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3387181	chr6:77571282-77594741	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv528107	chr6:77573235-77576861	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77571600-77579000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:77576200-77576800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:77576600-77577000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:77576600-77577200	Enhancers	Aorta	Aorta
5	chr6:77576600-77577400	Enhancers	Osteobl	bone

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