Variant report

Variant	rs11759065
Chromosome Location	chr6:150498458-150498459
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150491966..150494133-chr6:150498224..150500888,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11155709	0.80[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11155710	0.80[CEU][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11751046	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11755697	0.80[CEU][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes]
rs12195287	0.82[EUR][1000 genomes]
rs17079397	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs9322250	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9371803	0.80[JPT][hapmap]
rs9384212	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9397194	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9397725	0.91[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9478551	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150491400-150506400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:150491600-150501400	Weak transcription	HMEC	breast
3	chr6:150494400-150501000	Weak transcription	Fetal Brain Female	brain
4	chr6:150496200-150499600	Enhancers	Fetal Intestine Large	intestine
5	chr6:150496200-150499600	Enhancers	Fetal Intestine Small	intestine
6	chr6:150496200-150499600	Enhancers	Right Ventricle	heart
7	chr6:150496200-150499600	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr6:150496200-150499600	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:150496400-150499600	Enhancers	Fetal Muscle Leg	muscle
10	chr6:150496800-150499400	Enhancers	Duodenum Mucosa	Duodenum
11	chr6:150496800-150499600	Enhancers	Psoas Muscle	Psoas
12	chr6:150497000-150502000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:150497200-150498600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr6:150497200-150498800	Enhancers	Fetal Muscle Trunk	muscle
15	chr6:150497200-150499400	Enhancers	Esophagus	oesophagus
16	chr6:150497200-150499400	Enhancers	Lung	lung
17	chr6:150497200-150499600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:150497200-150499600	Enhancers	Pancreas	Pancrea
19	chr6:150497200-150499600	Enhancers	Placenta Amnion	Placenta Amnion
20	chr6:150497200-150499800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:150497200-150502400	Enhancers	Left Ventricle	heart
22	chr6:150497400-150499600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:150497400-150499600	Enhancers	Placenta	Placenta
24	chr6:150497400-150499800	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr6:150497600-150498800	Enhancers	K562	blood
26	chr6:150497600-150499600	Enhancers	Fetal Lung	lung
27	chr6:150497800-150500800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:150497800-150511000	Weak transcription	NHEK	skin
29	chr6:150498200-150498600	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr6:150498200-150499600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:150498200-150499600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr6:150498400-150498600	Enhancers	Fetal Heart	heart
33	chr6:150498400-150498600	Enhancers	Rectal Mucosa Donor 31	rectum
34	chr6:150498400-150498800	Enhancers	Colonic Mucosa	Colon
35	chr6:150498400-150500200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:150498400-150501000	Weak transcription	Right Atrium	heart

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