Variant report

Variant	rs11759374
Chromosome Location	chr6:81476492-81476493
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:81475807..81477610-chr6:81479287..81482021,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10485284	0.89[AFR][1000 genomes]
rs11753406	0.84[EUR][1000 genomes]
rs11754366	0.89[AFR][1000 genomes]
rs11755359	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755551	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756075	0.89[AFR][1000 genomes]
rs11757791	0.91[AFR][1000 genomes]
rs11759781	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662681	0.89[AFR][1000 genomes]
rs12662716	0.89[AFR][1000 genomes]
rs12662746	0.83[AFR][1000 genomes]
rs12663298	0.82[AFR][1000 genomes]
rs13197064	0.91[AFR][1000 genomes]
rs13197173	0.87[AFR][1000 genomes]
rs13197442	0.91[AFR][1000 genomes]
rs13198536	0.82[AFR][1000 genomes]
rs13201732	0.91[AFR][1000 genomes]
rs13208947	0.89[AFR][1000 genomes]
rs13212232	0.82[AFR][1000 genomes]
rs13219453	0.91[AFR][1000 genomes]
rs1377982	0.81[EUR][1000 genomes]
rs16892070	0.81[EUR][1000 genomes]
rs16892247	0.82[AFR][1000 genomes]
rs17777424	0.91[AFR][1000 genomes]
rs34173535	0.91[AFR][1000 genomes]
rs34192295	0.91[AFR][1000 genomes]
rs34391976	0.91[AFR][1000 genomes]
rs34691222	0.91[AFR][1000 genomes]
rs34899637	0.91[AFR][1000 genomes]
rs34957820	0.91[AFR][1000 genomes]
rs35372769	0.91[AFR][1000 genomes]
rs35520373	0.91[AFR][1000 genomes]
rs4451106	0.89[AFR][1000 genomes]
rs56070062	0.91[AFR][1000 genomes]
rs56080413	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56134318	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57763740	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58359379	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58728621	0.91[AFR][1000 genomes]
rs60135513	0.91[AFR][1000 genomes]
rs61149083	0.85[AFR][1000 genomes]
rs61367693	0.91[AFR][1000 genomes]
rs66868615	0.91[AFR][1000 genomes]
rs67341284	0.89[AFR][1000 genomes]
rs67738363	0.91[AFR][1000 genomes]
rs6918630	0.89[AFR][1000 genomes]
rs6921328	0.91[AFR][1000 genomes]
rs6934808	0.82[AFR][1000 genomes]
rs6939652	0.89[AFR][1000 genomes]
rs71566924	0.91[AFR][1000 genomes]
rs71566925	0.91[AFR][1000 genomes]
rs73465708	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73465794	0.82[AFR][1000 genomes]
rs73465795	0.82[AFR][1000 genomes]
rs73465800	0.82[AFR][1000 genomes]
rs73468217	0.82[AFR][1000 genomes]
rs73468236	0.82[AFR][1000 genomes]
rs73468238	0.82[AFR][1000 genomes]
rs73748841	0.91[AFR][1000 genomes]
rs73748842	0.85[AFR][1000 genomes]
rs73748844	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73748847	0.80[AFR][1000 genomes]
rs7773045	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs946484	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886316	chr6:81390313-81554464	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886317	chr6:81428336-81536597	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv886318	chr6:81447367-81769538	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81473000-81480600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:81476200-81479600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:81476200-81479800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:81476400-81479600	Enhancers	NHDF-Ad	bronchial

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