Variant report

Variant	rs11759412
Chromosome Location	chr6:13015501-13015502
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13011536..13013286-chr6:13013661..13016505,2	MCF-7	breast:
2	chr6:13011649..13013861-chr6:13014295..13015902,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10948372	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11755825	0.83[AMR][1000 genomes]
rs28360598	0.85[EUR][1000 genomes]
rs35241555	0.85[EUR][1000 genomes]
rs35684248	0.88[EUR][1000 genomes]
rs35713382	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4129937	0.87[EUR][1000 genomes]
rs4132045	0.87[EUR][1000 genomes]
rs4236098	0.87[EUR][1000 genomes]
rs4331981	0.96[EUR][1000 genomes]
rs4711897	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4715045	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6906890	0.82[AMR][1000 genomes]
rs9349439	0.88[EUR][1000 genomes]
rs9367308	0.84[EUR][1000 genomes]
rs9381635	0.88[EUR][1000 genomes]
rs9395336	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3521000	chr6:12561306-13128519	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3521001	chr6:12561306-13128519	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv817350	chr6:12922859-13137655	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13013000-13015600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
2	chr6:13013200-13016000	Flanking Active TSS	Stomach Smooth Muscle	stomach
3	chr6:13013400-13015600	Active TSS	Brain Anterior Caudate	brain
4	chr6:13013400-13015600	Active TSS	Pancreas	Pancrea
5	chr6:13013400-13016000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:13013400-13016000	Active TSS	Fetal Heart	heart
7	chr6:13013400-13016000	Active TSS	Left Ventricle	heart
8	chr6:13013600-13015600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:13013600-13015600	Active TSS	Brain Hippocampus Middle	brain
10	chr6:13013800-13016000	Active TSS	Right Ventricle	heart
11	chr6:13014000-13015600	Bivalent Enhancer	Placenta	Placenta
12	chr6:13014400-13016400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:13014600-13015600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
14	chr6:13014600-13015800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
15	chr6:13014600-13020200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr6:13014800-13016200	Enhancers	Fetal Brain Male	brain
17	chr6:13015000-13015600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:13015000-13015600	Active TSS	Duodenum Mucosa	Duodenum
19	chr6:13015000-13026000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:13015000-13026400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:13015200-13015600	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
22	chr6:13015200-13015600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
23	chr6:13015200-13015600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
24	chr6:13015200-13015600	Bivalent/Poised TSS	Fetal Brain Female	brain
25	chr6:13015200-13015600	Active TSS	Right Atrium	heart
26	chr6:13015200-13015800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr6:13015200-13024400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:13015400-13015600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
29	chr6:13015400-13015600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
30	chr6:13015400-13015600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
31	chr6:13015400-13015600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:13015400-13015600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:13015400-13015600	Flanking Active TSS	Brain Cingulate Gyrus	brain
34	chr6:13015400-13015800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:13015400-13015800	Flanking Active TSS	Brain Angular Gyrus	brain
36	chr6:13015400-13016000	Weak transcription	Aorta	Aorta
37	chr6:13015400-13016400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:13015400-13024400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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