Variant report

Variant	rs11761361
Chromosome Location	chr7:102107697-102107698
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:102107640-102107790	GM12873	blood:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
2	CTCF	chr7:102107620-102107770	A549	lung:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
3	CTCF	chr7:102107609-102107767	GM10266	blood:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
4	CTCF	chr7:102107589-102107825	SK-N-SH_RA	brain:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
5	CTCF	chr7:102107680-102107830	HUVEC	blood vessel:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
6	CTCF	chr7:102107660-102107810	GM12878	blood:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
7	CTCF	chr7:102107640-102107790	GM12868	blood:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
8	CTCF	chr7:102107620-102107770	HepG2	liver:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
9	STAT5A	chr7:102107669-102108077	GM12878	blood:	n/a	n/a
10	CTCF	chr7:102107574-102107756	MCF-7	breast:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
11	CTCF	chr7:102107660-102107810	HBMEC	blood vessel:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
12	CTCF	chr7:102107620-102107770	GM12878	blood:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
13	CTCF	chr7:102107620-102107770	Caco-2	colon:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
14	ZNF263	chr7:102107652-102109193	HEK293-T-REx	kidney:	n/a	chr7:102108925-102108946
15	CTCF	chr7:102107680-102107830	HMF	breast:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
16	CTCF	chr7:102107580-102107730	AG04450	lung:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
17	CTCF	chr7:102107660-102107810	HA-sp	spinal cord:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
18	CTCF	chr7:102107640-102107790	MCF-7	breast:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
19	CTCF	chr7:102107620-102107770	SAEC	small airway:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
20	ZNF143	chr7:102107525-102107867	GM12878	blood:	n/a	n/a
21	CTCF	chr7:102107564-102107808	Gliobla	brain:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
22	CTCF	chr7:102107680-102107830	GM12869	blood:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
23	POLR2A	chr7:102107411-102107902	HepG2	liver:	n/a	n/a
24	CTCF	chr7:102107660-102107810	AG09319	gingival:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
25	CTCF	chr7:102107490-102107927	IMR90	lung:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
26	CTCF	chr7:102107640-102107790	GM12866	blood:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
27	CTCF	chr7:102107620-102107770	HUVEC	blood vessel:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
28	YY1	chr7:102107543-102107797	GM12878	blood:	n/a	n/a
29	CTCF	chr7:102107582-102107761	HUVEC	blood vessel:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
30	RCOR1	chr7:102107593-102107843	Hela-S3	cervix:	n/a	n/a
31	BRCA1	chr7:102107666-102107866	Hela-S3	cervix:	n/a	n/a
32	CTCF	chr7:102107545-102107814	ProgFib	skin:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
33	CTCF	chr7:102107595-102107754	A549	lung:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
34	CTCF	chr7:102107620-102107770	GM12871	blood:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
35	CTCF	chr7:102107558-102107783	Fibrobl	skin:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
36	CTCF	chr7:102107660-102107810	Caco-2	colon:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
37	CTCF	chr7:102107412-102108004	MCF-7	breast:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
38	POLR2A	chr7:102107565-102108196	K562	blood:	n/a	n/a
39	CTCF	chr7:102107549-102107791	MCF-7	breast:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
40	CTCF	chr7:102107660-102107810	SAEC	small airway:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
41	MAZ	chr7:102107576-102107892	GM12878	blood:	n/a	n/a
42	CTCF	chr7:102107620-102107770	MCF-7	breast:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
43	CTCF	chr7:102107625-102107775	HepG2	liver:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
44	CTCF	chr7:102107680-102107830	HEK293	kidney:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
45	CTCF	chr7:102107565-102107782	MCF-7	breast:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
46	CTCF	chr7:102107477-102107798	MCF-7	breast:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
47	CTCF	chr7:102107454-102107903	A549	lung:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
48	CTCF	chr7:102107573-102107804	Kidney_OC	kidney:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
49	CTCF	chr7:102107660-102107810	GM06990	blood:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699
50	CTCF	chr7:102107640-102107790	HepG2	liver:	n/a	chr7:102107690-102107711 chr7:102107688-102107706 chr7:102107691-102107704 chr7:102107689-102107705 chr7:102107691-102107699

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:101929851..101931493-chr7:102106221..102107741,2	MCF-7	breast:
2	chr7:102074336..102076927-chr7:102105688..102108273,2	K562	blood:

Variant related genes	Relation type
LRWD1	TF binding region
ALKBH4	TF binding region
MIR4467	TF binding region
ENSG00000160991	Chromatin interaction
ENSG00000239480	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10953368	0.86[ASN][1000 genomes]
rs10953369	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764413	0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12533619	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12533649	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12538735	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13223494	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34808331	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3800987	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800988	0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4403344	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4473948	0.99[ASN][1000 genomes]
rs4487686	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4543479	0.86[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6465866	0.95[JPT][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6961234	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1814780	chr7:101912320-102375950	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv1819566	chr7:101912320-102375950	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	esv1822347	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1825708	chr7:101912320-102375950	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv1842898	chr7:101912320-102375950	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
6	esv1847418	chr7:101912320-102375950	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
7	nsv427798	chr7:101912320-102375950	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
8	nsv428182	chr7:101912320-102375950	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
9	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
10	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
11	nsv1029079	chr7:101939998-102112371	Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
12	esv1818954	chr7:101957513-102328097	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
13	esv1828190	chr7:101966669-102439077	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
14	esv1829377	chr7:101970299-102330884	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
15	nsv831083	chr7:101981005-102295869	Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
16	esv1806297	chr7:101981544-102330884	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
17	esv1810415	chr7:101993063-102375950	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	esv1811751	chr7:101993063-102375950	Enhancers Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
19	esv1829118	chr7:101993063-102375950	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
20	esv1833155	chr7:101993063-102375950	Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
21	esv1832541	chr7:102072448-102328097	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
22	nsv1025363	chr7:102072448-102471485	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
23	esv1803868	chr7:102080919-102109591	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
24	nsv888831	chr7:102082286-102274889	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
25	esv1817154	chr7:102083909-102329872	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
26	esv1847127	chr7:102085576-102329872	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
27	esv1822399	chr7:102085576-102335217	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
28	nsv888832	chr7:102087202-102183897	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
29	esv1796247	chr7:102087750-102327899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
30	nsv5879	chr7:102090768-102387803	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
31	nsv8192	chr7:102091052-102333199	Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
32	nsv607999	chr7:102091735-102113899	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
33	esv1833186	chr7:102094908-102337526	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
34	nsv888833	chr7:102101269-102334106	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
35	nsv608000	chr7:102102343-102110094	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
36	nsv888834	chr7:102102343-102111796	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
37	nsv888835	chr7:102103293-102110890	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
38	nsv608001	chr7:102103732-102110094	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
39	nsv608002	chr7:102103732-102110890	Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	13 gene(s)	inside rSNPs	diseases
40	esv1818955	chr7:102104752-102328097	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
41	nsv608003	chr7:102105566-102110938	Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	12 gene(s)	inside rSNPs	diseases
42	esv3439262	chr7:102107397-102110095	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs11761361	AC093668.2	cis	Artery Aorta	GTEx
rs11761361	AC093668.2	cis	Esophagus Mucosa	GTEx
rs11761361	POLR2J	Cis_1M	lymphoblastoid	RTeQTL
rs11761361	POLR2J	cis	multi-tissue	Pritchard
rs11761361	POLR2J	cis	Esophagus Muscularis	GTEx
rs11761361	AC093668.2	cis	Skin Sun Exposed Lower leg	GTEx
rs11761361	POLR2J	cis	Artery Tibial	GTEx
rs11761361	AC093668.2	cis	Adipose Subcutaneous	GTEx
rs11761361	AC093668.2	cis	Thyroid	GTEx
rs11761361	AC093668.2	cis	Stomach	GTEx
rs11761361	AC093668.2	cis	lung	GTEx
rs11761361	LRWD1	cis	Skin Sun Exposed Lower leg	GTEx
rs11761361	AC093668.2	cis	Esophagus Muscularis	GTEx
rs11761361	AC093668.2	cis	Artery Tibial	GTEx
rs11761361	AC093668.2	cis	Nerve Tibial	GTEx
rs11761361	AC093668.2	cis	Muscle Skeletal	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102106000-102107800	Enhancers	Fetal Brain Male	brain
2	chr7:102106000-102107800	Enhancers	Spleen	Spleen
3	chr7:102106000-102108000	Enhancers	Fetal Heart	heart
4	chr7:102106400-102108000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr7:102106400-102108000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr7:102106400-102108400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:102106400-102110000	Enhancers	Liver	Liver
8	chr7:102106400-102111000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr7:102106400-102112600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:102106400-102112600	Weak transcription	Aorta	Aorta
11	chr7:102106400-102119400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:102106600-102107800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:102106600-102107800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr7:102106600-102107800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:102106600-102107800	Enhancers	Fetal Thymus	thymus
16	chr7:102106600-102108000	Genic enhancers	Fetal Intestine Small	intestine
17	chr7:102106600-102108000	Weak transcription	Thymus	Thymus
18	chr7:102106600-102108200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr7:102106600-102108200	Weak transcription	A549	lung
20	chr7:102106600-102108400	Weak transcription	Placenta	Placenta
21	chr7:102106600-102108600	Weak transcription	Osteobl	bone
22	chr7:102106600-102108800	Genic enhancers	Primary T cells fromperipheralblood	blood
23	chr7:102106600-102110000	Weak transcription	Stomach Mucosa	stomach
24	chr7:102106600-102110200	Weak transcription	Small Intestine	intestine
25	chr7:102106600-102112400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:102106600-102112600	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr7:102106600-102112600	Weak transcription	Ovary	ovary
28	chr7:102106600-102112800	Weak transcription	Psoas Muscle	Psoas
29	chr7:102106600-102112800	Weak transcription	HSMMtube	muscle
30	chr7:102106600-102112800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr7:102106600-102113200	Weak transcription	Fetal Lung	lung
32	chr7:102106600-102115000	Weak transcription	Primary hematopoietic stem cells	blood
33	chr7:102106600-102119200	Weak transcription	Right Atrium	heart
34	chr7:102106800-102107800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr7:102106800-102107800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr7:102106800-102107800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr7:102106800-102107800	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr7:102106800-102107800	Weak transcription	Primary T cells from cord blood	blood
39	chr7:102106800-102107800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr7:102106800-102107800	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr7:102106800-102107800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr7:102106800-102107800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:102106800-102107800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:102106800-102107800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr7:102106800-102107800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:102106800-102107800	Weak transcription	Brain Anterior Caudate	brain
47	chr7:102106800-102107800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr7:102106800-102107800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr7:102106800-102107800	Weak transcription	Fetal Brain Female	brain
50	chr7:102106800-102107800	Weak transcription	Fetal Muscle Trunk	muscle

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