Variant report

Variant	rs11763598
Chromosome Location	chr7:140054170-140054171
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140052459..140054408-chr7:140056120..140059511,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10235190	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10251020	0.81[CHB][hapmap]
rs12667471	0.91[CHB][hapmap];0.83[CHD][hapmap];0.89[MKK][hapmap]
rs12669654	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12703793	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12703794	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12703796	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12703799	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.87[JPT][hapmap];0.85[MKK][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4341086	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4368896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4448174	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4587251	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62490397	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62490398	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6464710	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6464713	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6953541	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6970664	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6976805	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7786963	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7796411	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7803606	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022919	chr7:140043299-140120546	Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2762706	chr7:140054170-140119629	Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140026600-140060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:140033600-140096000	Weak transcription	Stomach Mucosa	stomach
3	chr7:140034800-140085600	Weak transcription	Psoas Muscle	Psoas
4	chr7:140035000-140074200	Weak transcription	Right Atrium	heart
5	chr7:140035200-140058200	Weak transcription	Small Intestine	intestine
6	chr7:140035200-140060600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:140038000-140060200	Strong transcription	Primary T cells from cord blood	blood
8	chr7:140038000-140061000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr7:140038200-140061200	Strong transcription	Fetal Stomach	stomach
10	chr7:140038600-140055600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:140038600-140056800	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr7:140038600-140060400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:140039000-140055800	Strong transcription	Liver	Liver
14	chr7:140039200-140060400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:140039400-140058600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:140039600-140054200	Strong transcription	Duodenum Mucosa	Duodenum
17	chr7:140039600-140057400	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr7:140039800-140054800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr7:140039800-140055600	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr7:140040000-140056800	Strong transcription	Fetal Intestine Large	intestine
21	chr7:140040600-140055000	Strong transcription	Primary B cells from cord blood	blood
22	chr7:140042000-140084800	Weak transcription	Hela-S3	cervix
23	chr7:140043000-140058200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr7:140043000-140060400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr7:140043200-140058000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr7:140044600-140055600	Strong transcription	H1 Cell Line	embryonic stem cell
27	chr7:140044600-140056800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr7:140044800-140057000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr7:140045800-140058200	Weak transcription	Esophagus	oesophagus
30	chr7:140046000-140076200	Weak transcription	Right Ventricle	heart
31	chr7:140046400-140056400	Weak transcription	Colonic Mucosa	Colon
32	chr7:140046800-140055600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr7:140046800-140055600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr7:140046800-140056800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr7:140047000-140057200	Strong transcription	K562	blood
36	chr7:140047200-140054600	Strong transcription	Placenta	Placenta
37	chr7:140047200-140054800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr7:140047600-140084200	Weak transcription	Fetal Brain Male	brain
39	chr7:140047800-140064400	Weak transcription	HMEC	breast
40	chr7:140048000-140058400	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr7:140048200-140058000	Weak transcription	A549	lung
42	chr7:140048400-140054200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr7:140048800-140055600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:140049200-140058400	Weak transcription	NHLF	lung
45	chr7:140049200-140060400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:140049200-140090200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr7:140049400-140055200	Strong transcription	Brain Germinal Matrix	brain
48	chr7:140049400-140058200	Weak transcription	NHEK	skin
49	chr7:140049600-140054200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:140049600-140056800	Strong transcription	Fetal Muscle Leg	muscle

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