Variant report
| Variant | rs11764418 |
|---|---|
| Chromosome Location | chr7:147731275-147731276 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11762995 | 0.88[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11763976 | 1.00[JPT][hapmap] |
| rs11766463 | 0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11767963 | 1.00[JPT][hapmap] |
| rs11768090 | 0.87[AMR][1000 genomes] |
| rs11771401 | 0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11771457 | 1.00[JPT][hapmap] |
| rs11773676 | 0.88[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap] |
| rs1882687 | 1.00[JPT][hapmap] |
| rs1922885 | 1.00[JPT][hapmap] |
| rs1922886 | 1.00[JPT][hapmap] |
| rs1922887 | 1.00[JPT][hapmap] |
| rs2373288 | 0.88[EUR][1000 genomes] |
| rs2707555 | 0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes] |
| rs2707577 | 1.00[JPT][hapmap] |
| rs2708275 | 1.00[JPT][hapmap] |
| rs2708276 | 1.00[JPT][hapmap] |
| rs2710085 | 1.00[JPT][hapmap] |
| rs2710086 | 1.00[JPT][hapmap] |
| rs2710087 | 1.00[JPT][hapmap] |
| rs2710089 | 1.00[JPT][hapmap] |
| rs73464281 | 0.80[EUR][1000 genomes] |
| rs7779536 | 1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs7780285 | 0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7793537 | 1.00[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs9640247 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023913 | chr7:147521075-147806318 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026058 | chr7:147521109-147783042 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv539179 | chr7:147521109-147783042 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv934002 | chr7:147521110-147807705 | Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv1017610 | chr7:147523752-147806427 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
