Variant report
| Variant | rs11765485 |
|---|---|
| Chromosome Location | chr7:138128917-138128918 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000214815 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs12707386 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17169595 | 1.00[ASN][1000 genomes] |
| rs35822896 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57258992 | 1.00[ASN][1000 genomes] |
| rs57833573 | 1.00[ASN][1000 genomes] |
| rs57924062 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58054997 | 1.00[ASN][1000 genomes] |
| rs59103803 | 0.81[ASN][1000 genomes] |
| rs6970822 | 1.00[ASN][1000 genomes] |
| rs7459225 | 0.90[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7808971 | 1.00[ASN][1000 genomes] |
| rs7808984 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34048 | chr7:137724092-138213119 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv831153 | chr7:138078179-138265648 | Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| 3 | nsv970583 | chr7:138125511-138137818 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
