Variant report

Variant	rs11765912
Chromosome Location	chr7:126336217-126336218
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:126308425..126309973-chr7:126335993..126338773,2	K562	blood:
2	chr7:126335306..126336854-chr7:126339390..126341574,2	MCF-7	breast:
3	chr7:126329105..126333653-chr7:126334255..126342288,12	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1008906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275004	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs10275020	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs10487452	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1074728	0.84[CHB][hapmap]
rs11764888	0.83[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11765247	0.83[CHB][hapmap]
rs11767915	0.83[CHB][hapmap]
rs11767976	0.80[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap]
rs11770188	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs11773107	0.83[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1345211	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1361982	0.83[CHB][hapmap]
rs1468157	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17149953	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs17150011	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs17150014	0.90[CHB][hapmap]
rs17610771	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs17612316	0.80[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2157821	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs2299495	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs41463444	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4731326	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap]
rs62477942	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62477944	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62477945	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62477947	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6467098	0.86[JPT][hapmap]
rs6953879	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7805288	0.83[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7805959	0.83[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9690442	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:126332400-126339000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:126332800-126336600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:126336000-126339000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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