Variant report

Variant	rs11766225
Chromosome Location	chr7:105163157-105163158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr7:105162424-105163300	K562	blood:	n/a	chr7:105162730-105162740 chr7:105162730-105162739 chr7:105162729-105162741 chr7:105162729-105162741 chr7:105162756-105162767 chr7:105162720-105162729
2	MAX	chr7:105161414-105163312	A549	lung:	n/a	chr7:105162034-105162049 chr7:105162036-105162043 chr7:105162035-105162046 chr7:105161981-105161990 chr7:105162035-105162044 chr7:105162034-105162044
3	PAX5	chr7:105162926-105163494	GM12878	blood:	n/a	n/a
4	NR2F2	chr7:105161520-105163352	K562	blood:	n/a	n/a
5	MAZ	chr7:105161612-105163252	K562	blood:	n/a	chr7:105162034-105162049 chr7:105162036-105162043 chr7:105162035-105162046 chr7:105161981-105161990 chr7:105162035-105162044
6	MXI1	chr7:105161065-105163516	SK-N-SH	brain:	n/a	n/a
7	REST	chr7:105161706-105163253	H1-neurons	neurons:	n/a	chr7:105162256-105162266 chr7:105162184-105162193 chr7:105162263-105162273 chr7:105161851-105161864 chr7:105162251-105162264
8	GTF2F1	chr7:105162600-105163160	Hela-S3	cervix:	n/a	n/a
9	CREB1	chr7:105161701-105163437	K562	blood:	n/a	n/a
10	MAX	chr7:105161608-105163315	MCF-7	breast:	n/a	chr7:105162034-105162049 chr7:105162036-105162043 chr7:105162035-105162046 chr7:105161981-105161990 chr7:105162035-105162044 chr7:105162034-105162044
11	POLR2A	chr7:105161898-105163223	PBDE	blood:	n/a	n/a
12	POLR2A	chr7:105162461-105163176	GM12878	blood:	n/a	n/a
13	MAX	chr7:105161781-105163250	GM12878	blood:	n/a	chr7:105162034-105162049 chr7:105162036-105162043 chr7:105162035-105162046 chr7:105161981-105161990 chr7:105162035-105162044 chr7:105162034-105162044
14	TRIM28	chr7:105161851-105163158	K562	blood:	n/a	n/a
15	TEAD4	chr7:105162372-105163259	K562	blood:	n/a	n/a
16	TBP	chr7:105161597-105163164	K562	blood:	n/a	n/a
17	POLR2A	chr7:105161672-105163173	PANC-1	pancreas:	n/a	n/a
18	POLR2A	chr7:105161453-105163183	K562	blood:	n/a	n/a
19	SIN3AK20	chr7:105161455-105163254	MCF-7	breast:	n/a	n/a
20	MTA3	chr7:105162706-105163324	GM12878	blood:	n/a	n/a
21	BHLHE40	chr7:105161582-105163259	GM12878	blood:	n/a	n/a
22	CREB1	chr7:105161625-105163171	HepG2	liver:	n/a	n/a
23	POLR2A	chr7:105161496-105163914	HepG2	liver:	n/a	n/a
24	POLR2A	chr7:105161722-105163161	K562	blood:	n/a	n/a
25	NRF1	chr7:105162525-105163184	GM12878	blood:	n/a	n/a
26	HDAC2	chr7:105161596-105163349	MCF-7	breast:	n/a	chr7:105161719-105161733 chr7:105162841-105162849
27	HEY1	chr7:105161450-105163320	K562	blood:	n/a	chr7:105162509-105162524 chr7:105162180-105162195 chr7:105162467-105162482 chr7:105162242-105162257
28	KAP1	chr7:105162833-105163316	HEK293	kidney:	n/a	n/a
29	MYC	chr7:105161454-105163170	K562	blood:	n/a	chr7:105162034-105162049 chr7:105162036-105162043 chr7:105162035-105162046 chr7:105161981-105161990 chr7:105162035-105162044 chr7:105162034-105162044
30	RUNX3	chr7:105162612-105163383	GM12878	blood:	n/a	n/a
31	POLR2A	chr7:105161221-105163319	HepG2	liver:	n/a	n/a
32	PAX5	chr7:105162996-105163405	GM12878	blood:	n/a	n/a
33	ZNF384	chr7:105162649-105163275	GM12878	blood:	n/a	n/a
34	PML	chr7:105162325-105163228	GM12878	blood:	n/a	n/a
35	CBX3	chr7:105162379-105163324	K562	blood:	n/a	n/a
36	WRNIP1	chr7:105162891-105163265	GM12878	blood:	n/a	n/a
37	POLR2A	chr7:105161789-105163161	GM12891	blood:	n/a	n/a
38	TEAD4	chr7:105162353-105163193	K562	blood:	n/a	n/a
39	HA-E2F1	chr7:105161646-105163215	MCF-7	breast:	n/a	chr7:105162625-105162640 chr7:105162061-105162071 chr7:105162514-105162523 chr7:105162277-105162287
40	MXI1	chr7:105161495-105163362	IMR90	lung:	n/a	n/a
41	POLR2A	chr7:105161809-105163209	U87	brain:	n/a	n/a
42	TAF1	chr7:105163052-105163348	GM12878	blood:	n/a	n/a
43	PAX5	chr7:105162961-105163356	GM12878	blood:	n/a	n/a
44	NR2F2	chr7:105161765-105163183	MCF-7	breast:	n/a	n/a
45	ZNF143	chr7:105162502-105163164	K562	blood:	n/a	chr7:105162514-105162524
46	TCF12	chr7:105161704-105163254	A549	lung:	n/a	n/a
47	IRF1	chr7:105161474-105163199	K562	blood:	n/a	chr7:105162729-105162743 chr7:105161713-105161733 chr7:105161717-105161731 chr7:105162717-105162731
48	POLR2A	chr7:105161498-105163214	MCF10A-Er-Src	breast:	n/a	n/a
49	MYBL2	chr7:105162409-105163217	HepG2	liver:	n/a	n/a
50	MAX	chr7:105161574-105163262	HCT-116	colon:	n/a	chr7:105162034-105162049 chr7:105162036-105162043 chr7:105162035-105162046 chr7:105161981-105161990 chr7:105162035-105162044 chr7:105162034-105162044

No.	Distal block	Cell Line	Cell type
1	chr7:104653151..104655503-chr7:105160083..105164345,7	K562	blood:
2	chr7:105160261..105165362-chr7:105168599..105174293,22	MCF-7	breast:
3	chr19:55628556..55629065-chr7:105162615..105163265,2	Hela-S3	cervix:
4	chr7:105160711..105163604-chr7:105655467..105658687,3	K562	blood:
5	chr7:105162459..105163197-chr7:105172183..105173025,3	MCF-7	breast:
6	chr7:105158727..105165017-chr7:105166972..105176993,56	K562	blood:
7	chr7:105159598..105163989-chr7:105219696..105223115,7	MCF-7	breast:
8	chr7:104652163..104655972-chr7:105160292..105163807,4	MCF-7	breast:
9	chr7:105160687..105164718-chr7:105170642..105174239,14	MCF-7	breast:
10	chr7:104653054..104655993-chr7:105161169..105164095,3	MCF-7	breast:
11	chr7:104653151..104655346-chr7:105160083..105164134,5	K562	blood:
12	chr7:105026529..105029377-chr7:105162488..105165118,2	MCF-7	breast:
13	chr7:105027746..105030082-chr7:105160759..105163665,5	MCF-7	breast:

Variant related genes	Relation type
PUS7	TF binding region
ENSG00000228393	Chromatin interaction
ENSG00000223886	Chromatin interaction
ENSG00000135249	Chromatin interaction
ENSG00000128536	Chromatin interaction
ENSG00000239569	Chromatin interaction
ENSG00000185055	Chromatin interaction
ENSG00000125503	Chromatin interaction
ENSG00000135250	Chromatin interaction
ENSG00000005483	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4613913	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4730092	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6466070	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1028228	chr7:104807207-105182998	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1015688	chr7:104849770-105182998	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1023767	chr7:104931143-105190662	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv539049	chr7:104931143-105190662	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv1022065	chr7:104997315-105190662	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv888930	chr7:105012975-105170476	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
9	nsv888931	chr7:105012975-105173974	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv888932	chr7:105012975-105179756	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv888933	chr7:105012975-105193051	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1023564	chr7:105018484-105182998	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv464668	chr7:105088693-105208492	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv608069	chr7:105088693-105208492	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv888935	chr7:105110990-105193051	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
16	nsv888936	chr7:105119308-105193051	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
17	esv1793037	chr7:105137305-105167132	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
18	nsv8197	chr7:105160920-105166965	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105161200-105163200	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr7:105161200-105163400	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr7:105161200-105163400	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr7:105161200-105163400	Active TSS	Brain Germinal Matrix	brain
5	chr7:105161200-105163400	Active TSS	A549	lung
6	chr7:105161400-105163200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:105161400-105163200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:105161400-105163200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:105161400-105163200	Active TSS	Fetal Brain Male	brain
10	chr7:105161400-105163400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:105161400-105163400	Active TSS	Fetal Kidney	kidney
12	chr7:105161600-105163200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:105161600-105163200	Flanking Active TSS	Primary B cells from cord blood	blood
14	chr7:105161600-105163200	Active TSS	Aorta	Aorta
15	chr7:105161600-105163400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:105161600-105163400	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr7:105161600-105163400	Active TSS	NHDF-Ad	bronchial
18	chr7:105161800-105163200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:105161800-105163200	Active TSS	Brain Hippocampus Middle	brain
20	chr7:105161800-105163400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:105162000-105163200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr7:105162000-105163200	Active TSS	Brain Cingulate Gyrus	brain
23	chr7:105162000-105163200	Active TSS	Left Ventricle	heart
24	chr7:105162000-105163200	Active TSS	Ovary	ovary
25	chr7:105162000-105163400	Active TSS	Brain Anterior Caudate	brain
26	chr7:105162000-105163400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr7:105162000-105163400	Active TSS	Fetal Brain Female	brain
28	chr7:105162000-105163600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:105162200-105163200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr7:105162200-105163200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:105162200-105163200	Active TSS	Fetal Muscle Trunk	muscle
32	chr7:105162200-105163200	Active TSS	Right Ventricle	heart
33	chr7:105162200-105163200	Active TSS	Thymus	Thymus
34	chr7:105162200-105163400	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr7:105162400-105163200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr7:105162800-105163200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
37	chr7:105162800-105163200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr7:105162800-105163200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr7:105162800-105163200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr7:105162800-105163200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:105162800-105163200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
42	chr7:105162800-105163200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr7:105162800-105163200	Flanking Active TSS	Primary B cells from peripheral blood	blood
44	chr7:105162800-105163200	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr7:105162800-105163200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
46	chr7:105162800-105163200	Flanking Active TSS	Primary hematopoietic stem cells	blood
47	chr7:105162800-105163200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
48	chr7:105162800-105163200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
49	chr7:105162800-105163200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
50	chr7:105162800-105163200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links