Variant report

Variant	rs11767915
Chromosome Location	chr7:126288566-126288567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:126287875..126289715-chr7:126294505..126296060,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1008906	0.80[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap]
rs10246061	0.87[ASN][1000 genomes]
rs10253770	0.88[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap]
rs10274867	0.88[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs10487452	0.88[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1074728	0.84[CHB][hapmap]
rs11764888	0.94[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11765247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11765912	0.83[CHB][hapmap]
rs11767976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11769015	0.81[ASN][1000 genomes]
rs11770188	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs11773107	0.94[CEU][hapmap];0.91[CHB][hapmap]
rs1345211	0.80[CEU][hapmap]
rs1361982	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1468157	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs17149953	0.89[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs17149975	0.81[ASN][1000 genomes]
rs17149978	0.87[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes]
rs17150011	0.89[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs17150014	0.88[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17610771	0.94[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17612316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2157821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs2299495	0.80[CEU][hapmap];0.82[CHB][hapmap]
rs41463444	0.88[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs4731326	0.82[CEU][hapmap]
rs56142844	0.81[ASN][1000 genomes]
rs56256561	0.89[ASN][1000 genomes]
rs57391111	0.89[ASN][1000 genomes]
rs58699988	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60714151	0.89[ASN][1000 genomes]
rs62477862	0.81[ASN][1000 genomes]
rs62477869	0.81[ASN][1000 genomes]
rs62477942	0.88[EUR][1000 genomes]
rs62477944	0.88[EUR][1000 genomes]
rs62479322	0.81[ASN][1000 genomes]
rs73224961	0.81[ASN][1000 genomes]
rs73224962	0.81[ASN][1000 genomes]
rs73224963	0.81[ASN][1000 genomes]
rs734524	0.84[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs7805288	0.94[CEU][hapmap];0.91[CHB][hapmap];0.87[EUR][1000 genomes]
rs7805959	0.94[CEU][hapmap];0.91[CHB][hapmap];0.88[EUR][1000 genomes]
rs9690442	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529300	chr7:125669493-126587858	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032938	chr7:126067684-126587859	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv539119	chr7:126067684-126587859	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv889187	chr7:126219766-126478190	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032108	chr7:126278349-126362592	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv5939	chr7:126279355-126322778	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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