Variant report

Variant	rs11768009
Chromosome Location	chr7:47686958-47686959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:47685575..47687990-chr7:47705109..47707807,2	MCF-7	breast:
2	chr7:47681304..47684900-chr7:47685639..47688597,3	MCF-7	breast:
3	chr7:47672920..47677913-chr7:47686931..47690412,5	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10951916	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11766347	0.80[CEU][hapmap]
rs11770543	0.80[CEU][hapmap];0.81[JPT][hapmap]
rs12531737	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs12535121	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12535169	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12537656	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13242997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243511	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2347990	0.82[CHB][hapmap]
rs4720603	0.89[ASN][1000 genomes]
rs4724606	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4724607	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4724608	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4724610	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6969715	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7790476	0.80[CEU][hapmap]
rs965924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026223	chr7:47560728-48243287	Genic enhancers Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:47677000-47687000	Weak transcription	NHLF	lung
2	chr7:47678600-47687000	Weak transcription	Spleen	Spleen
3	chr7:47681800-47687200	Weak transcription	Osteobl	bone
4	chr7:47685600-47688200	Enhancers	Primary B cells from peripheral blood	blood
5	chr7:47685800-47687000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:47685800-47687800	Enhancers	Placenta	Placenta
7	chr7:47685800-47688200	Enhancers	Fetal Intestine Large	intestine
8	chr7:47686200-47687000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:47686200-47687600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr7:47686200-47687600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:47686200-47688000	Enhancers	Primary B cells from cord blood	blood
12	chr7:47686200-47688200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr7:47686200-47688200	Enhancers	Fetal Thymus	thymus
14	chr7:47686200-47688800	Enhancers	Primary hematopoietic stem cells	blood
15	chr7:47686200-47690600	Enhancers	A549	lung
16	chr7:47686400-47687000	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr7:47686400-47687200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr7:47686400-47687400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr7:47686400-47687400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr7:47686400-47687600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr7:47686400-47687800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr7:47686400-47687800	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr7:47686400-47688000	Enhancers	Primary T cells from cord blood	blood
24	chr7:47686400-47688000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr7:47686400-47688400	Enhancers	Fetal Muscle Leg	muscle
26	chr7:47686400-47688800	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr7:47686600-47687000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:47686600-47687000	Enhancers	Brain Substantia Nigra	brain
29	chr7:47686600-47687000	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr7:47686600-47687200	Enhancers	H1 Cell Line	embryonic stem cell
31	chr7:47686600-47687200	Enhancers	H9 Cell Line	embryonic stem cell
32	chr7:47686600-47687200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr7:47686600-47687200	Enhancers	Fetal Lung	lung
34	chr7:47686600-47687200	Enhancers	Placenta Amnion	Placenta Amnion
35	chr7:47686600-47687400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:47686600-47687400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:47686600-47687400	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr7:47686600-47687400	Enhancers	Fetal Muscle Trunk	muscle
39	chr7:47686600-47687600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr7:47686600-47687600	Enhancers	Fetal Intestine Small	intestine
41	chr7:47686600-47687800	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr7:47686600-47687800	Enhancers	Liver	Liver
43	chr7:47686600-47688000	Enhancers	Fetal Stomach	stomach
44	chr7:47686600-47688000	Enhancers	Right Atrium	heart
45	chr7:47686600-47688000	Enhancers	Thymus	Thymus
46	chr7:47686600-47688200	Enhancers	Fetal Heart	heart
47	chr7:47686800-47687000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr7:47686800-47687000	Enhancers	Brain Hippocampus Middle	brain
49	chr7:47686800-47687200	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr7:47686800-47687200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links