Variant report

Variant	rs11768363
Chromosome Location	chr7:147419683-147419684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10952705	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1101045	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs12112619	0.88[ASN][1000 genomes]
rs12154840	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1404735	0.81[CHB][hapmap];0.88[ASN][1000 genomes]
rs1404737	0.92[CEU][hapmap];0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1543265	0.92[CEU][hapmap];0.91[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2373178	0.92[CEU][hapmap];0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4295581	0.92[CEU][hapmap];0.91[CHB][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs700317	0.83[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.84[ASN][1000 genomes]
rs851723	0.94[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.83[LWK][hapmap];0.81[MKK][hapmap];0.81[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11768363	SSPO	cis	parietal	SCAN
rs11768363	ZNF777	cis	cerebellum	SCAN
rs11768363	ATG9B	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147417200-147420600	Weak transcription	Brain Anterior Caudate	brain
2	chr7:147417600-147421800	Weak transcription	Brain Substantia Nigra	brain
3	chr7:147419000-147420400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:147419000-147421000	Enhancers	Fetal Lung	lung
5	chr7:147419200-147420400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:147419400-147419800	Enhancers	Fetal Kidney	kidney
7	chr7:147419400-147420000	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:147419600-147419800	Enhancers	Brain Angular Gyrus	brain
9	chr7:147419600-147420000	Enhancers	Brain Hippocampus Middle	brain
10	chr7:147419600-147420400	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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