Variant report

Variant	rs11769891
Chromosome Location	chr7:137693583-137693584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:137583612..137584186-chr7:137693303..137693962,2	MCF-7	breast:
2	chr7:137588132..137589223-chr7:137692976..137694528,9	MCF-7	breast:
3	chr7:137587081..137590120-chr7:137692557..137694516,4	MCF-7	breast:
4	chr7:137587845..137589721-chr7:137692660..137694705,36	K562	blood:
5	chr7:137693418..137696407-chr7:137696677..137699578,2	K562	blood:
6	chr7:137588062..137588984-chr7:137693187..137694172,4	MCF-7	breast:
7	chr7:137638660..137640658-chr7:137692161..137694338,3	MCF-7	breast:
8	chr7:137692957..137695430-chr7:137713449..137716116,2	K562	blood:

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10954596	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10954597	0.98[EUR][1000 genomes]
rs11972734	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13232124	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1424376	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34394140	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34469503	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34970488	0.88[EUR][1000 genomes]
rs35508415	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35556241	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56083840	0.85[EUR][1000 genomes]
rs713471	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137687000-137700000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:137687600-137693800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:137687800-137693600	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr7:137687800-137694000	Weak transcription	HMEC	breast
5	chr7:137688000-137699600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:137688000-137703800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:137691400-137694400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:137692800-137693600	Enhancers	Rectal Smooth Muscle	rectum
9	chr7:137692800-137693800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr7:137693000-137694200	Enhancers	Placenta	Placenta
11	chr7:137693200-137693600	Enhancers	Fetal Muscle Trunk	muscle
12	chr7:137693200-137694200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:137693400-137693600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr7:137693400-137693600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:137693400-137693600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:137693400-137693600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:137693400-137693600	Enhancers	Adipose Nuclei	Adipose
18	chr7:137693400-137693600	Active TSS	Aorta	Aorta
19	chr7:137693400-137693600	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr7:137693400-137693600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
21	chr7:137693400-137693600	Enhancers	Brain Substantia Nigra	brain
22	chr7:137693400-137693600	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr7:137693400-137693600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr7:137693400-137693600	Enhancers	Stomach Smooth Muscle	stomach
25	chr7:137693400-137693600	Enhancers	Spleen	Spleen
26	chr7:137693400-137693600	Enhancers	Dnd41	blood
27	chr7:137693400-137693600	Enhancers	NHDF-Ad	bronchial
28	chr7:137693400-137693600	Enhancers	NHEK	skin
29	chr7:137693400-137693800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:137693400-137693800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr7:137693400-137693800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr7:137693400-137693800	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr7:137693400-137693800	Enhancers	Primary T cells fromperipheralblood	blood
34	chr7:137693400-137693800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr7:137693400-137693800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:137693400-137693800	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr7:137693400-137693800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:137693400-137693800	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr7:137693400-137693800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr7:137693400-137693800	Active TSS	Brain Cingulate Gyrus	brain
41	chr7:137693400-137693800	Enhancers	Brain Hippocampus Middle	brain
42	chr7:137693400-137693800	Enhancers	Fetal Heart	heart
43	chr7:137693400-137693800	Enhancers	Fetal Muscle Leg	muscle
44	chr7:137693400-137693800	Enhancers	Fetal Thymus	thymus
45	chr7:137693400-137693800	Flanking Active TSS	Hela-S3	cervix
46	chr7:137693400-137693800	Flanking Active TSS	HepG2	liver
47	chr7:137693400-137694200	Enhancers	H1 Cell Line	embryonic stem cell
48	chr7:137693400-137694200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr7:137693400-137694200	Enhancers	Primary B cells from peripheral blood	blood
50	chr7:137693400-137694200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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