Variant report

Variant	rs11769924
Chromosome Location	chr7:138284289-138284290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10271000	1.00[ASN][1000 genomes]
rs11773577	0.81[EUR][1000 genomes]
rs13231090	1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13234062	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3213902	1.00[ASN][1000 genomes]
rs33935215	0.86[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34718165	0.81[EUR][1000 genomes]
rs35674497	0.81[EUR][1000 genomes]
rs36099217	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55918517	0.83[EUR][1000 genomes]
rs67586210	0.88[EUR][1000 genomes]
rs71541397	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73164647	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030956	chr7:138163169-138579519	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138272600-138286200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr7:138273000-138285000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:138273000-138286200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr7:138273000-138286200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:138273600-138286800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:138284200-138293000	Weak transcription	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links