Variant report

Variant	rs11778470
Chromosome Location	chr8:63185962-63185963
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10090048	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10090129	0.87[EUR][1000 genomes]
rs10094502	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10095168	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10099748	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10101551	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10448028	0.96[CEU][hapmap];0.82[CHB][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1154592	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774413	0.97[ASN][1000 genomes]
rs12216817	0.82[EUR][1000 genomes]
rs12548234	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12549042	0.96[CEU][hapmap];0.81[CHB][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12679323	0.97[EUR][1000 genomes]
rs12681000	0.86[EUR][1000 genomes]
rs13249875	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13250200	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13252919	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13255752	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13261910	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13262465	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13264993	0.93[EUR][1000 genomes]
rs13268451	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13271280	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13278227	0.84[AMR][1000 genomes]
rs13281158	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1351702	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384675	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384678	0.95[ASN][1000 genomes]
rs1384683	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1384684	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1483165	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1483173	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1483176	0.96[ASN][1000 genomes]
rs1483177	0.82[CHB][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1552205	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2272014	0.96[CEU][hapmap];0.82[CHB][hapmap];0.84[YRI][hapmap];0.93[EUR][1000 genomes]
rs2272015	0.86[EUR][1000 genomes]
rs2351652	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2351653	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2625413	0.98[ASN][1000 genomes]
rs2882742	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4262319	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4391424	0.95[ASN][1000 genomes]
rs4532584	0.83[AMR][1000 genomes]
rs4532585	0.84[AMR][1000 genomes]
rs4637821	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4738948	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4738949	0.81[ASN][1000 genomes]
rs5020321	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6983788	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7002566	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7017869	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017975	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827326	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7834815	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs900491	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs900492	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9298062	0.96[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs9643536	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9643537	0.81[AMR][1000 genomes]
rs9657031	0.94[ASN][1000 genomes]
rs9987255	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019143	chr8:63142202-63390820	Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2757277	chr8:63156123-63260182	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv2759621	chr8:63156123-63260182	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63163200-63190400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:63184800-63186000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:63184800-63187000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:63184800-63187000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:63185000-63186400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:63185200-63186200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:63185200-63187000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:63185400-63186200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:63185600-63186400	Weak transcription	A549	lung

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