Variant report

Variant	rs11778901
Chromosome Location	chr8:10202033-10202034
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10194581..10198913-chr8:10201395..10205726,4	K562	blood:
2	chr8:10200552..10204035-chr8:10205072..10206852,3	K562	blood:

Variant related genes	Relation type
ENSG00000249848	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10903325	0.94[CEU][hapmap];0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11249985	0.83[EUR][1000 genomes]
rs11249990	0.83[CEU][hapmap];0.87[EUR][1000 genomes]
rs11249991	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs11777018	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11778030	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11781529	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11782293	0.82[EUR][1000 genomes]
rs11783091	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs11783281	0.84[EUR][1000 genomes]
rs11785954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13258691	0.82[EUR][1000 genomes]
rs13264133	0.84[EUR][1000 genomes]
rs13272537	0.83[EUR][1000 genomes]
rs17695316	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs34514972	0.82[EUR][1000 genomes]
rs34917779	0.83[EUR][1000 genomes]
rs35287467	0.83[EUR][1000 genomes]
rs35524676	0.83[EUR][1000 genomes]
rs4570161	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs4840479	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4841325	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4841326	0.88[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55656427	0.88[EUR][1000 genomes]
rs55965226	0.83[EUR][1000 genomes]
rs56028519	0.88[EUR][1000 genomes]
rs56141232	0.90[EUR][1000 genomes]
rs6989061	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs71516569	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9650648	0.82[EUR][1000 genomes]
rs9650649	0.83[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv527326	chr8:10199548-10320019	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv1018940	chr8:10200886-10220973	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10192600-10206200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr8:10192600-10282400	Weak transcription	Gastric	stomach
3	chr8:10192800-10206400	Weak transcription	Thymus	Thymus
4	chr8:10193000-10215400	Weak transcription	Fetal Intestine Small	intestine
5	chr8:10193000-10235000	Weak transcription	Pancreas	Pancrea
6	chr8:10193200-10203800	Weak transcription	Right Atrium	heart
7	chr8:10193400-10202400	Weak transcription	Right Ventricle	heart
8	chr8:10193600-10202800	Weak transcription	Brain Anterior Caudate	brain
9	chr8:10193600-10220400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr8:10196800-10208000	Weak transcription	Adipose Nuclei	Adipose
11	chr8:10196800-10214200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:10196800-10228000	Weak transcription	Liver	Liver
13	chr8:10198400-10206400	Weak transcription	Primary T cells from cord blood	blood
14	chr8:10199600-10203600	Weak transcription	Fetal Muscle Leg	muscle
15	chr8:10199600-10206800	Weak transcription	Fetal Thymus	thymus
16	chr8:10200800-10202400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr8:10200800-10207400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:10201000-10202400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr8:10201200-10206000	Weak transcription	Fetal Brain Male	brain
20	chr8:10201800-10203600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr8:10201800-10206400	Weak transcription	Fetal Brain Female	brain
22	chr8:10201800-10206800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:10201800-10207200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:10201800-10208200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:10201800-10221800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr8:10202000-10203200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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