Variant report

Variant	rs11779090
Chromosome Location	chr8:10649195-10649196
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:10648269..10650512-chr8:10653379..10655643,2	K562	blood:
2	chr8:10647998..10650941-chr8:10651803..10654879,3	K562	blood:
3	chr8:10515210..10517092-chr8:10648053..10650432,2	K562	blood:
4	chr8:10648353..10650941-chr8:10651549..10653303,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C8orf74-4	chr8:10649122-10649238	ucscGeneNc_uc003wtg_1

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10089548	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10089869	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10096939	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099100	0.83[ASN][1000 genomes]
rs10110723	0.83[ASN][1000 genomes]
rs10481452	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10503411	0.89[ASN][1000 genomes]
rs10503412	0.95[ASN][1000 genomes]
rs1078543	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1139066	0.83[ASN][1000 genomes]
rs1139843	0.83[ASN][1000 genomes]
rs11778578	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783803	1.00[ASN][1000 genomes]
rs11784335	0.83[ASN][1000 genomes]
rs13250710	0.95[ASN][1000 genomes]
rs13265197	0.82[EUR][1000 genomes]
rs17152366	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17152410	1.00[ASN][1000 genomes]
rs17152412	1.00[ASN][1000 genomes]
rs17774023	0.95[ASN][1000 genomes]
rs2163381	0.90[ASN][1000 genomes]
rs2409660	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2409664	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898250	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4240668	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4840514	0.90[ASN][1000 genomes]
rs4840515	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4841440	0.90[ASN][1000 genomes]
rs58297791	0.95[ASN][1000 genomes]
rs58772184	0.83[ASN][1000 genomes]
rs6983956	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6984094	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008259	1.00[ASN][1000 genomes]
rs7350075	0.95[ASN][1000 genomes]
rs7350124	0.90[ASN][1000 genomes]
rs73542533	0.90[ASN][1000 genomes]
rs73544348	0.90[ASN][1000 genomes]
rs73546269	1.00[ASN][1000 genomes]
rs7836178	1.00[ASN][1000 genomes]
rs891560	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
5	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
8	nsv519768	chr8:10600254-10691993	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1024806	chr8:10605438-10662555	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1031709	chr8:10610545-10657726	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv2764105	chr8:10610557-10657726	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv519376	chr8:10611708-10691993	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
14	nsv429860	chr8:10615990-10685890	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
15	nsv1023085	chr8:10617908-10657584	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv539470	chr8:10617908-10657584	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv1019754	chr8:10617908-10700140	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
18	nsv539471	chr8:10617908-10700140	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
19	nsv1026230	chr8:10618928-10652924	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv539472	chr8:10618928-10652924	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv1031726	chr8:10627742-10749369	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10610800-10662000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr8:10618800-10665200	Weak transcription	Fetal Brain Female	brain
3	chr8:10619200-10656400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:10619400-10661600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr8:10620000-10669800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr8:10621200-10662000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr8:10621400-10656000	Weak transcription	HepG2	liver
8	chr8:10622800-10656000	Weak transcription	A549	lung
9	chr8:10623200-10650000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr8:10623400-10656800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:10623400-10662600	Weak transcription	Fetal Thymus	thymus
12	chr8:10623400-10662800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr8:10623400-10665000	Weak transcription	Fetal Intestine Large	intestine
14	chr8:10623600-10667000	Weak transcription	Thymus	Thymus
15	chr8:10623800-10649600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr8:10623800-10656800	Weak transcription	Gastric	stomach
17	chr8:10624000-10649600	Weak transcription	Pancreas	Pancrea
18	chr8:10635000-10652200	Weak transcription	Liver	Liver
19	chr8:10635400-10664400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:10635600-10656800	Weak transcription	Ovary	ovary
21	chr8:10639800-10649200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr8:10639800-10649600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:10640200-10669800	Weak transcription	Aorta	Aorta
24	chr8:10640400-10649800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr8:10640600-10662800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr8:10641200-10657000	Weak transcription	Psoas Muscle	Psoas
27	chr8:10641200-10665000	Weak transcription	Dnd41	blood
28	chr8:10641400-10662000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr8:10641600-10650400	Weak transcription	Hela-S3	cervix
30	chr8:10643600-10651200	Strong transcription	Primary T cells from cord blood	blood
31	chr8:10644200-10653600	Weak transcription	Right Atrium	heart
32	chr8:10644200-10661400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr8:10644400-10649400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr8:10644400-10656800	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr8:10645000-10670000	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr8:10646800-10649600	Weak transcription	Esophagus	oesophagus
37	chr8:10646800-10662800	Weak transcription	GM12878-XiMat	blood
38	chr8:10647000-10649800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr8:10647000-10650000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr8:10647000-10674400	Weak transcription	Right Ventricle	heart
41	chr8:10647000-10681200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr8:10647200-10652600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr8:10647200-10656000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr8:10647200-10656800	Weak transcription	Primary B cells from cord blood	blood
45	chr8:10647200-10656800	Weak transcription	NHLF	lung
46	chr8:10647200-10657000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr8:10647200-10657000	Weak transcription	Colon Smooth Muscle	Colon
48	chr8:10647200-10659400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr8:10647200-10661800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr8:10647200-10673600	Weak transcription	H9 Cell Line	embryonic stem cell

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