Variant report

Variant	rs11779336
Chromosome Location	chr8:10674178-10674179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10655273..10657441-chr8:10673003..10675779,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10089548	0.89[ASN][1000 genomes]
rs10089869	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs10096939	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10110723	0.89[CEU][hapmap]
rs10503411	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10503412	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs1078543	1.00[JPT][hapmap]
rs11250061	1.00[MEX][hapmap]
rs1139843	1.00[CHD][hapmap]
rs11774457	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776965	0.94[ASN][1000 genomes]
rs11779094	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782490	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11783803	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs13265197	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13269447	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17152366	1.00[JPT][hapmap]
rs17152410	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs17152412	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17152542	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17152623	0.89[ASN][1000 genomes]
rs17774023	1.00[JPT][hapmap]
rs2409660	0.89[ASN][1000 genomes]
rs2409664	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs28544530	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675255	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28706358	0.89[ASN][1000 genomes]
rs2898245	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3808604	0.89[ASN][1000 genomes]
rs4240668	1.00[JPT][hapmap]
rs4840515	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4840518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841447	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4841448	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841449	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841453	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841455	0.90[CEU][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.89[ASN][1000 genomes]
rs57689233	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57868806	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6983956	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6984094	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7003456	1.00[CHD][hapmap]
rs7012879	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7350075	1.00[JPT][hapmap]
rs7350124	1.00[JPT][hapmap]
rs73531553	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73531554	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73533521	0.89[ASN][1000 genomes]
rs73533523	0.89[ASN][1000 genomes]
rs7813875	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7815184	1.00[CHD][hapmap]
rs7822666	1.00[CHD][hapmap]
rs7836178	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs891560	1.00[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv519768	chr8:10600254-10691993	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
8	nsv519376	chr8:10611708-10691993	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv429860	chr8:10615990-10685890	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1019754	chr8:10617908-10700140	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
11	nsv539471	chr8:10617908-10700140	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
12	nsv1031726	chr8:10627742-10749369	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10647000-10674400	Weak transcription	Right Ventricle	heart
2	chr8:10647000-10681200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:10648200-10683400	Weak transcription	Brain Angular Gyrus	brain
4	chr8:10650000-10676200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:10657400-10681400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:10657400-10685800	Weak transcription	Psoas Muscle	Psoas
7	chr8:10657600-10674200	Weak transcription	Pancreas	Pancrea
8	chr8:10657600-10674600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:10657600-10674600	Weak transcription	Esophagus	oesophagus
10	chr8:10657600-10674600	Weak transcription	Left Ventricle	heart
11	chr8:10657600-10681800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr8:10657800-10674400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr8:10657800-10674600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr8:10657800-10680600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:10657800-10680600	Weak transcription	HSMMtube	muscle
16	chr8:10658400-10676000	Weak transcription	HepG2	liver
17	chr8:10658600-10676000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:10659400-10676000	Weak transcription	NHLF	lung
19	chr8:10659600-10682400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:10660000-10679200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:10660400-10677000	Weak transcription	NHDF-Ad	bronchial
22	chr8:10662600-10674400	Weak transcription	Brain Anterior Caudate	brain
23	chr8:10662600-10676000	Weak transcription	Brain Germinal Matrix	brain
24	chr8:10662800-10674400	Weak transcription	Brain Hippocampus Middle	brain
25	chr8:10663000-10681200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr8:10663000-10681400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr8:10663000-10696200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr8:10665400-10674400	Weak transcription	Fetal Intestine Large	intestine
29	chr8:10665400-10674600	Weak transcription	Spleen	Spleen
30	chr8:10665400-10675200	Weak transcription	Ovary	ovary
31	chr8:10665400-10678600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr8:10665400-10680800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr8:10665600-10674600	Weak transcription	Fetal Brain Female	brain
34	chr8:10665600-10674600	Weak transcription	Fetal Muscle Leg	muscle
35	chr8:10665600-10676000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr8:10665600-10680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:10665800-10688200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr8:10666000-10675800	Weak transcription	Fetal Lung	lung
39	chr8:10666400-10678600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr8:10666400-10695200	Strong transcription	Primary T cells from cord blood	blood
41	chr8:10666800-10692400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:10667400-10675200	Weak transcription	HSMM	muscle
43	chr8:10667400-10677400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr8:10667600-10693200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr8:10668000-10674600	Weak transcription	Thymus	Thymus
46	chr8:10668400-10682400	Weak transcription	Colonic Mucosa	Colon
47	chr8:10668400-10696200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr8:10668600-10681400	Weak transcription	A549	lung
49	chr8:10669200-10679600	Strong transcription	Dnd41	blood
50	chr8:10669200-10692800	Strong transcription	Primary B cells from cord blood	blood

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