Variant report

Variant	rs11780122
Chromosome Location	chr8:10020210-10020211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10089339	1.00[CHB][hapmap]
rs10097184	1.00[CHB][hapmap]
rs10111917	1.00[CHB][hapmap]
rs10903321	1.00[CHB][hapmap]
rs11249975	1.00[ASN][1000 genomes]
rs11774220	1.00[CHB][hapmap]
rs11774276	1.00[ASN][1000 genomes]
rs11776035	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11776973	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11783705	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12156030	1.00[ASN][1000 genomes]
rs12156387	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12678938	1.00[ASN][1000 genomes]
rs13252276	1.00[ASN][1000 genomes]
rs13252589	1.00[CHB][hapmap]
rs13258409	1.00[ASN][1000 genomes]
rs13263482	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13263803	1.00[ASN][1000 genomes]
rs13272731	1.00[ASN][1000 genomes]
rs13272793	1.00[CHB][hapmap]
rs13275453	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13279701	1.00[CHB][hapmap]
rs1484641	1.00[CHB][hapmap]
rs17151658	1.00[CHB][hapmap]
rs17151667	1.00[CHB][hapmap]
rs17151675	1.00[CHB][hapmap]
rs17151684	1.00[CHB][hapmap]
rs17151699	1.00[CHB][hapmap]
rs17151713	1.00[CHB][hapmap]
rs17151728	1.00[CHB][hapmap]
rs17151741	1.00[CHB][hapmap]
rs17151745	1.00[CHB][hapmap]
rs17151748	1.00[CHB][hapmap]
rs17151763	1.00[CHB][hapmap]
rs17690549	1.00[CHB][hapmap]
rs17693945	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17694485	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17707665	1.00[CHB][hapmap]
rs17707988	1.00[CHB][hapmap]
rs17708090	1.00[CHB][hapmap]
rs17708114	1.00[CHB][hapmap]
rs17746227	1.00[CHB][hapmap]
rs17746245	1.00[CHB][hapmap]
rs17747335	1.00[CHB][hapmap]
rs17750324	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17751178	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1976071	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2952186	1.00[CHB][hapmap]
rs2975675	1.00[CHB][hapmap]
rs34487797	1.00[ASN][1000 genomes]
rs34919878	1.00[ASN][1000 genomes]
rs35013996	1.00[ASN][1000 genomes]
rs35114037	1.00[ASN][1000 genomes]
rs35437983	1.00[ASN][1000 genomes]
rs4240640	1.00[CHB][hapmap]
rs4394398	1.00[ASN][1000 genomes]
rs4526366	1.00[ASN][1000 genomes]
rs4840467	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4841294	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4841295	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4841296	1.00[CHB][hapmap]
rs4841312	1.00[CHB][hapmap]
rs56408109	1.00[ASN][1000 genomes]
rs6985941	1.00[CHB][hapmap]
rs6994060	1.00[CHB][hapmap]
rs6997224	1.00[CHB][hapmap]
rs7014570	1.00[CHB][hapmap]
rs73189192	1.00[ASN][1000 genomes]
rs73189202	1.00[ASN][1000 genomes]
rs7822745	1.00[CHB][hapmap]
rs7831285	1.00[ASN][1000 genomes]
rs7835507	1.00[CHB][hapmap]
rs7835960	1.00[CHB][hapmap]
rs7840347	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916493	chr8:9806580-10029482	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv610263	chr8:9941021-10090149	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831230	chr8:9953343-10139350	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1027280	chr8:9958259-10058984	Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1850829	chr8:9958321-10045451	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv890344	chr8:9995515-10060638	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv831231	chr8:10001214-10189094	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9996600-10036200	Weak transcription	Primary T cells from cord blood	blood
2	chr8:10003400-10026600	Weak transcription	Liver	Liver
3	chr8:10008200-10021400	Weak transcription	Fetal Brain Female	brain
4	chr8:10011000-10023800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:10015800-10024000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:10016200-10026000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:10017000-10025000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:10017200-10021000	Weak transcription	Fetal Brain Male	brain
9	chr8:10019000-10021200	Weak transcription	Brain Germinal Matrix	brain
10	chr8:10019000-10023800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr8:10019000-10025800	Weak transcription	Fetal Intestine Small	intestine
12	chr8:10019600-10021000	Weak transcription	Spleen	Spleen
13	chr8:10020000-10025800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links